Variant report

Variant	rs183854084
Chromosome Location	chr5:74161292-74161293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:74160377-74163048	HepG2	liver:	n/a	n/a
2	MAX	chr5:74161188-74163068	HepG2	liver:	n/a	chr5:74162270-74162280 chr5:74162396-74162406
3	CHD2	chr5:74161222-74161392	HepG2	liver:	n/a	n/a
4	POLR2A	chr5:74161026-74163038	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr5:74160806-74162477	MCF10A-Er-Src	breast:	n/a	n/a
6	MXI1	chr5:74161189-74163023	HepG2	liver:	n/a	n/a
7	POLR2A	chr5:74160759-74163043	HepG2	liver:	n/a	n/a
8	SMC3	chr5:74160673-74161461	HepG2	liver:	n/a	n/a
9	YY1	chr5:74161277-74162398	H1-hESC	embryonic stem cell:	n/a	chr5:74161820-74161834 chr5:74161851-74161865 chr5:74161678-74161692 chr5:74161707-74161729 chr5:74161684-74161693 chr5:74162250-74162264
10	ZNF263	chr5:74160620-74162789	HEK293-T-REx	kidney:	n/a	n/a
11	CTBP2	chr5:74161126-74162967	H1-hESC	embryonic stem cell:	n/a	n/a
12	POLR2A	chr5:74161120-74162928	H1-hESC	embryonic stem cell:	n/a	n/a
13	POLR2A	chr5:74161267-74162738	HEK293	kidney:	n/a	n/a
14	REST	chr5:74161115-74161451	HepG2	liver:	n/a	n/a
15	TBP	chr5:74161255-74163024	H1-hESC	embryonic stem cell:	n/a	n/a
16	REST	chr5:74160888-74163163	H1-neurons	neurons:	n/a	chr5:74161964-74161977 chr5:74161838-74161851 chr5:74161891-74161909
17	TAF1	chr5:74161184-74161868	H1-neurons	neurons:	n/a	n/a
18	TBP	chr5:74161272-74162981	HepG2	liver:	n/a	n/a
19	POLR2A	chr5:74161278-74162982	HepG2	liver:	n/a	n/a
20	MAX	chr5:74161103-74162960	A549	lung:	n/a	chr5:74162270-74162280 chr5:74162396-74162406
21	POLR2A	chr5:74161280-74161298	MCF-7	breast:	n/a	n/a
22	POLR2A	chr5:74161045-74164158	H1-hESC	embryonic stem cell:	n/a	n/a
23	CREB1	chr5:74160647-74163073	HepG2	liver:	n/a	n/a
24	SIN3A	chr5:74160653-74163041	H1-hESC	embryonic stem cell:	n/a	n/a
25	TCF12	chr5:74161152-74161862	A549	lung:	n/a	chr5:74161793-74161800
26	POLR2A	chr5:74161066-74163056	H1-neurons	neurons:	n/a	n/a
27	MBD4	chr5:74160663-74161501	HepG2	liver:	n/a	n/a
28	TAF1	chr5:74161079-74163055	H1-hESC	embryonic stem cell:	n/a	n/a
29	CHD1	chr5:74160489-74163268	H1-hESC	embryonic stem cell:	n/a	chr5:74162137-74162147 chr5:74162977-74162984
30	YY1	chr5:74161222-74162374	SK-N-SH	brain:	n/a	chr5:74161820-74161834 chr5:74161851-74161865 chr5:74161678-74161692 chr5:74161707-74161729 chr5:74161684-74161693 chr5:74162250-74162264
31	POLR2A	chr5:74161127-74161930	H1-hESC	embryonic stem cell:	n/a	n/a
32	POLR2A	chr5:74160249-74161841	HepG2	liver:	n/a	n/a
33	TAF7	chr5:74160994-74162960	H1-hESC	embryonic stem cell:	n/a	n/a
34	KAP1	chr5:74160385-74161861	HEK293	kidney:	n/a	n/a
35	HEY1	chr5:74160345-74163102	HepG2	liver:	n/a	chr5:74161997-74162012 chr5:74162243-74162258 chr5:74162276-74162291 chr5:74162345-74162360
36	POLR2A	chr5:74161082-74162765	H1-neurons	neurons:	n/a	n/a
37	MAX	chr5:74160584-74163163	HepG2	liver:	n/a	chr5:74162270-74162280 chr5:74162396-74162406
38	TAF1	chr5:74161143-74161905	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
ENSG00000271714	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3338870	chr5:74159996-74164294	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3502490	chr5:74160996-74163344	Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3502491	chr5:74160996-74163344	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74158600-74163000	Active TSS	H1 Cell Line	embryonic stem cell
2	chr5:74158800-74163800	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr5:74159000-74162800	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr5:74159400-74163000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:74159400-74163000	Active TSS	H9 Cell Line	embryonic stem cell
6	chr5:74159400-74163800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr5:74159600-74162800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:74159800-74163000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:74160000-74162800	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr5:74160000-74163000	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr5:74160200-74162200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr5:74160200-74163000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr5:74160200-74163000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:74160400-74161400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:74160400-74161600	Bivalent/Poised TSS	HepG2	liver
16	chr5:74160400-74162800	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr5:74160400-74163000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:74160400-74163000	Active TSS	Brain Angular Gyrus	brain
19	chr5:74160400-74163200	Active TSS	Brain Cingulate Gyrus	brain
20	chr5:74160600-74161600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr5:74160600-74161600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr5:74160600-74161600	Flanking Active TSS	Dnd41	blood
23	chr5:74160600-74162600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:74160600-74163000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr5:74160600-74163000	Active TSS	Fetal Kidney	kidney
26	chr5:74160600-74163000	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr5:74160800-74161400	Flanking Active TSS	Brain Hippocampus Middle	brain
28	chr5:74160800-74161400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
29	chr5:74160800-74161400	Bivalent Enhancer	Small Intestine	intestine
30	chr5:74160800-74161400	Flanking Active TSS	A549	lung
31	chr5:74160800-74161600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
32	chr5:74160800-74161600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
33	chr5:74160800-74161600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr5:74160800-74161600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr5:74160800-74162600	Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr5:74160800-74162800	Active TSS	iPS-18 Cell Line	embryonic stem cell
37	chr5:74160800-74162800	Active TSS	Brain Substantia Nigra	brain
38	chr5:74160800-74163000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:74160800-74163000	Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr5:74160800-74163000	Active TSS	Brain Anterior Caudate	brain
41	chr5:74161000-74161400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr5:74161000-74161400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
43	chr5:74161000-74161400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
44	chr5:74161000-74161400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
45	chr5:74161000-74161400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
46	chr5:74161000-74161400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
47	chr5:74161000-74161400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
48	chr5:74161000-74161400	Bivalent Enhancer	Fetal Lung	lung
49	chr5:74161000-74161400	Flanking Bivalent TSS/Enh	Thymus	Thymus
50	chr5:74161000-74161600	Bivalent/Poised TSS	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links