Variant report

Variant	rs183876237
Chromosome Location	chr12:4726628-4726629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:4724909..4726859-chr12:4756521..4758491,2	K562	blood:

Variant related genes	Relation type
ENSG00000111254	Chromatin interaction
ENSG00000139180	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557123	chr12:4436632-4736569	Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv832318	chr12:4655799-4875837	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv898617	chr12:4715082-4768619	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv468986	chr12:4726068-4751798	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv557124	chr12:4726068-4751798	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv898618	chr12:4726068-4764137	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4714600-4726800	Weak transcription	Right Ventricle	heart
2	chr12:4716400-4727200	Weak transcription	HepG2	liver
3	chr12:4721200-4727200	Weak transcription	Psoas Muscle	Psoas
4	chr12:4723400-4726800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr12:4723600-4726800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr12:4723600-4726800	Weak transcription	Fetal Stomach	stomach
7	chr12:4723600-4727000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr12:4723600-4727200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:4723600-4728200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr12:4723600-4735600	Weak transcription	HMEC	breast
11	chr12:4723800-4726800	Weak transcription	Thymus	Thymus
12	chr12:4723800-4727000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr12:4723800-4727400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr12:4723800-4728000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr12:4723800-4728600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr12:4723800-4732000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr12:4724000-4727000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr12:4724000-4727000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr12:4724000-4727200	Weak transcription	Brain Germinal Matrix	brain
20	chr12:4724200-4726800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr12:4724200-4726800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr12:4724200-4727400	Weak transcription	Fetal Thymus	thymus
23	chr12:4724200-4735600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr12:4724200-4756800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr12:4724400-4727200	Weak transcription	Osteobl	bone
26	chr12:4724400-4727600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr12:4724600-4726800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr12:4724800-4727200	Weak transcription	Ovary	ovary
29	chr12:4724800-4727400	Weak transcription	HSMMtube	muscle
30	chr12:4724800-4729000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr12:4725000-4726800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr12:4725000-4726800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr12:4725000-4727200	Weak transcription	Fetal Brain Female	brain
34	chr12:4725000-4727600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr12:4725200-4726800	Weak transcription	Primary B cells from peripheral blood	blood
36	chr12:4725200-4726800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr12:4725200-4726800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr12:4725200-4726800	Weak transcription	Adipose Nuclei	Adipose
39	chr12:4725200-4726800	Weak transcription	Fetal Intestine Small	intestine
40	chr12:4725200-4727000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr12:4725200-4727200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr12:4725200-4727200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr12:4725200-4727200	Weak transcription	Spleen	Spleen
44	chr12:4725200-4727400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr12:4725200-4727600	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr12:4725200-4727600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr12:4725200-4727600	Weak transcription	Fetal Intestine Large	intestine
48	chr12:4725200-4727600	Weak transcription	Dnd41	blood
49	chr12:4725200-4728200	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr12:4725200-4728400	Weak transcription	Esophagus	oesophagus

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