Variant report

Variant	rs1840152
Chromosome Location	chr4:99123995-99123996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99118953..99122803-chr4:99123376..99126878,4	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10018670	0.84[AFR][1000 genomes]
rs10029450	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17027322	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17027330	0.98[AFR][1000 genomes]
rs17027331	0.98[AFR][1000 genomes]
rs17027339	0.98[AFR][1000 genomes]
rs1840153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28409461	0.98[AFR][1000 genomes]
rs28440777	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28484692	0.98[AFR][1000 genomes]
rs28539805	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28586989	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28603037	0.98[AFR][1000 genomes]
rs28609687	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28612663	0.93[AFR][1000 genomes]
rs55758425	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6814081	0.94[AFR][1000 genomes]
rs6814168	0.94[AFR][1000 genomes]
rs6820913	0.98[AFR][1000 genomes]
rs6821608	0.98[AFR][1000 genomes]
rs72898354	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72898359	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72898360	0.82[AFR][1000 genomes]
rs72898390	0.98[AFR][1000 genomes]
rs72898391	0.98[AFR][1000 genomes]
rs7663435	0.94[AFR][1000 genomes]
rs7666690	0.91[EUR][1000 genomes]
rs7666998	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7670303	0.95[AFR][1000 genomes]
rs7673915	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7674181	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7680467	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529623	chr4:98501338-99460166	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1000956	chr4:98732458-99178588	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1001570	chr4:98976239-99239838	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv879650	chr4:99057457-99172232	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv461595	chr4:99065480-99172175	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv594939	chr4:99065480-99172175	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv470061	chr4:99078105-99160699	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1004616	chr4:99085875-99308901	Genic enhancers Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	esv2763801	chr4:99094892-99413853	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
11	nsv879651	chr4:99105055-99441349	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99123000-99124600	Enhancers	Primary B cells from peripheral blood	blood
2	chr4:99123200-99124200	Enhancers	Primary B cells from cord blood	blood
3	chr4:99123200-99124400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:99123200-99131400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr4:99123600-99125200	Enhancers	Fetal Brain Male	brain

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