Variant report

Variant	rs184033115
Chromosome Location	chr5:15499689-15499690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3A	chr5:15499664-15501937	H1-hESC	embryonic stem cell:	n/a	chr5:15500416-15500429 chr5:15500559-15500572
2	YY1	chr5:15499681-15500339	SK-N-SH_RA	brain:	n/a	n/a
3	TBP	chr5:15499682-15500953	H1-hESC	embryonic stem cell:	n/a	n/a
4	MAX	chr5:15499614-15500453	A549	lung:	n/a	n/a
5	PBX3	chr5:15499663-15500463	SK-N-SH	brain:	n/a	n/a
6	POLR2A	chr5:15499585-15500608	HUVEC	blood vessel:	n/a	n/a
7	STAT3	chr5:15499619-15499736	MCF10A-Er-Src	breast:	n/a	chr5:15499716-15499724
8	POLR2A	chr5:15499665-15501053	HUVEC	blood vessel:	n/a	n/a
9	MAZ	chr5:15499441-15503111	IMR90	lung:	n/a	chr5:15500615-15500625
10	POLR2A	chr5:15499671-15501010	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
FBXL7	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3345774	chr5:15499527-15501975	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15496600-15499800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:15499200-15499800	Bivalent Enhancer	Fetal Brain Male	brain
3	chr5:15499200-15500000	Flanking Active TSS	Dnd41	blood
4	chr5:15499400-15499800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr5:15499400-15499800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:15499400-15500000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:15499400-15500000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:15499400-15500000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr5:15499400-15500000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr5:15499400-15500000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:15499400-15500000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:15499400-15500000	Flanking Active TSS	Osteobl	bone
13	chr5:15499400-15500200	Flanking Active TSS	HUVEC	blood vessel
14	chr5:15499400-15500600	Active TSS	Brain Inferior Temporal Lobe	brain
15	chr5:15499400-15500800	Active TSS	H1 Cell Line	embryonic stem cell
16	chr5:15499400-15501600	Active TSS	Brain Anterior Caudate	brain
17	chr5:15499400-15501800	Active TSS	Brain Hippocampus Middle	brain
18	chr5:15499400-15502200	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr5:15499400-15502600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:15499400-15502600	Active TSS	Colon Smooth Muscle	Colon
21	chr5:15499400-15502600	Active TSS	NHDF-Ad	bronchial
22	chr5:15499400-15502800	Active TSS	Brain Substantia Nigra	brain
23	chr5:15499600-15499800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr5:15499600-15499800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr5:15499600-15499800	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
26	chr5:15499600-15499800	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:15499600-15499800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr5:15499600-15499800	Flanking Active TSS	Brain Angular Gyrus	brain
29	chr5:15499600-15499800	Flanking Active TSS	Brain Cingulate Gyrus	brain
30	chr5:15499600-15499800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr5:15499600-15499800	Active TSS	Placenta	Placenta
32	chr5:15499600-15499800	Flanking Active TSS	Fetal Stomach	stomach
33	chr5:15499600-15499800	Bivalent Enhancer	Stomach Mucosa	stomach
34	chr5:15499600-15499800	Active TSS	NHLF	lung
35	chr5:15499600-15500000	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr5:15499600-15500000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr5:15499600-15500000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr5:15499600-15500000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
39	chr5:15499600-15500000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr5:15499600-15500000	Bivalent Enhancer	Liver	Liver
41	chr5:15499600-15500000	Flanking Active TSS	Brain Germinal Matrix	brain
42	chr5:15499600-15500000	Flanking Active TSS	Fetal Brain Female	brain
43	chr5:15499600-15500000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr5:15499600-15500000	Flanking Active TSS	Fetal Lung	lung
45	chr5:15499600-15500000	Flanking Active TSS	Fetal Muscle Leg	muscle
46	chr5:15499600-15500000	Active TSS	Psoas Muscle	Psoas
47	chr5:15499600-15500000	Flanking Active TSS	Rectal Smooth Muscle	rectum
48	chr5:15499600-15500000	Flanking Active TSS	HSMM	muscle
49	chr5:15499600-15500000	Flanking Active TSS	HSMMtube	muscle
50	chr5:15499600-15500200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell

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