Variant report

Variant	rs184033954
Chromosome Location	chr11:65962768-65962769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65900786..65903675-chr11:65962216..65963909,2	MCF-7	breast:
2	chr11:65960425..65963156-chr11:65986066..65988813,2	MCF-7	breast:
3	chr11:65955163..65956790-chr11:65961357..65963533,2	K562	blood:
4	chr11:65956435..65961151-chr11:65961394..65965581,4	K562	blood:

Variant related genes	Relation type
ENSG00000175115	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	esv3332923	chr11:65961593-65981589	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65929600-65977800	Weak transcription	HSMMtube	muscle
2	chr11:65938400-65978000	Weak transcription	Aorta	Aorta
3	chr11:65940000-65978000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:65940400-65978000	Weak transcription	Esophagus	oesophagus
5	chr11:65944400-65977800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:65944600-65963600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:65949800-65977800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:65950200-65978400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:65951200-65962800	Weak transcription	Brain Substantia Nigra	brain
10	chr11:65952200-65967400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:65952400-65967800	Weak transcription	Brain Germinal Matrix	brain
12	chr11:65953000-65966200	Strong transcription	Primary T cells from cord blood	blood
13	chr11:65956400-65967400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:65957000-65978400	Weak transcription	Brain Angular Gyrus	brain
15	chr11:65957400-65966000	Strong transcription	Primary B cells from peripheral blood	blood
16	chr11:65958400-65967400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:65958400-65967600	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr11:65958800-65977800	Weak transcription	Lung	lung
19	chr11:65958800-65978600	Weak transcription	Pancreas	Pancrea
20	chr11:65958800-65983600	Weak transcription	Small Intestine	intestine
21	chr11:65958800-65989200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:65959000-65965800	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:65959200-65967800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr11:65959200-65989400	Weak transcription	K562	blood
25	chr11:65959400-65963200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr11:65959400-65963400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr11:65959400-65983400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:65959600-65965600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:65959600-65966200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr11:65959600-65968400	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr11:65959600-65978400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr11:65959600-65983600	Weak transcription	Colonic Mucosa	Colon
33	chr11:65959800-65964000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr11:65959800-65966200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr11:65959800-65966200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr11:65959800-65967000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:65960000-65963400	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr11:65960000-65963400	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr11:65960000-65963400	Weak transcription	Stomach Mucosa	stomach
40	chr11:65960000-65963800	Strong transcription	Fetal Stomach	stomach
41	chr11:65960000-65965400	Weak transcription	Fetal Lung	lung
42	chr11:65960000-65966200	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr11:65960200-65963200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr11:65960200-65963400	Strong transcription	HSMM	muscle
45	chr11:65960200-65963400	Weak transcription	NHLF	lung
46	chr11:65960200-65964000	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr11:65960200-65966000	Strong transcription	Primary B cells from cord blood	blood
48	chr11:65960200-65968000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr11:65960200-65977800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:65960200-65978000	Weak transcription	Right Ventricle	heart

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