Variant report

Variant	rs184121088
Chromosome Location	chr4:56772988-56772989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:56767756..56770065-chr4:56770884..56773389,3	K562	blood:

Variant related genes	Relation type
ENSG00000090989	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv3406311	chr4:56580578-56840877	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv427681	chr4:56651921-56908209	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv879024	chr4:56742205-56786589	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv879025	chr4:56742205-56808607	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3492848	chr4:56770810-56775264	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3492849	chr4:56770810-56775264	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3433210	chr4:56772961-56773560	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56721600-56774600	Weak transcription	Fetal Heart	heart
2	chr4:56734400-56773000	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr4:56734600-56773400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:56737000-56774800	Weak transcription	Psoas Muscle	Psoas
5	chr4:56748000-56773200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr4:56748200-56773400	Weak transcription	Gastric	stomach
7	chr4:56748600-56773000	Weak transcription	Right Ventricle	heart
8	chr4:56748600-56773200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr4:56748600-56773400	Weak transcription	Colonic Mucosa	Colon
10	chr4:56748600-56776800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:56751400-56776200	Weak transcription	A549	lung
12	chr4:56756000-56773200	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr4:56756600-56773200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr4:56758600-56773200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr4:56759800-56774200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr4:56760200-56773600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr4:56760400-56773600	Weak transcription	Pancreas	Pancrea
18	chr4:56760400-56774400	Weak transcription	Fetal Brain Male	brain
19	chr4:56760400-56775000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:56761800-56773400	Weak transcription	Thymus	Thymus
21	chr4:56762200-56773200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr4:56762200-56776600	Weak transcription	Osteobl	bone
23	chr4:56762400-56773600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr4:56764400-56773200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr4:56764400-56773200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr4:56764400-56773200	Weak transcription	Brain Anterior Caudate	brain
27	chr4:56764400-56773200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr4:56764400-56773400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr4:56764400-56773600	Weak transcription	Colon Smooth Muscle	Colon
30	chr4:56766400-56773000	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr4:56766800-56773200	Weak transcription	NH-A	brain
32	chr4:56766800-56786800	Weak transcription	Ovary	ovary
33	chr4:56767000-56773000	Strong transcription	Primary B cells from cord blood	blood
34	chr4:56767400-56773000	Weak transcription	HUVEC	blood vessel
35	chr4:56767400-56773400	Weak transcription	Brain Angular Gyrus	brain
36	chr4:56767400-56776200	Weak transcription	NHDF-Ad	bronchial
37	chr4:56769000-56774800	Weak transcription	Fetal Lung	lung
38	chr4:56769200-56773000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr4:56769200-56773600	Weak transcription	HSMMtube	muscle
40	chr4:56769600-56773000	Weak transcription	Fetal Kidney	kidney
41	chr4:56769600-56773200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr4:56770200-56774800	Weak transcription	GM12878-XiMat	blood
43	chr4:56770600-56773000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr4:56770600-56773200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr4:56770800-56773600	Weak transcription	Brain Substantia Nigra	brain
46	chr4:56770800-56777800	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr4:56771000-56773000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr4:56771000-56773000	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr4:56771000-56773000	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr4:56771000-56773800	Weak transcription	Primary B cells from peripheral blood	blood

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