Variant report

Variant	rs184154605
Chromosome Location	chr5:73983705-73983706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:73969331..73972056-chr5:73981357..73983781,2	MCF-7	breast:
2	chr5:73983424..73985241-chr5:73988547..73990421,2	MCF-7	breast:
3	chr5:73981038..73983852-chr5:73999852..74002635,2	MCF-7	breast:
4	chr5:73981661..73984902-chr5:74226605..74228461,3	K562	blood:
5	chr5:73980953..73983731-chr5:74012002..74014571,3	MCF-7	breast:
6	chr5:73983027..73985005-chr5:74061405..74062936,2	K562	blood:

Variant related genes	Relation type
ENSG00000164347	Chromatin interaction
ENSG00000049860	Chromatin interaction
ENSG00000164346	Chromatin interaction
ENSG00000239517	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13844	chr5:73979961-73993853	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv598652	chr5:73980182-73992881	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
3	nsv934214	chr5:73981349-73993050	Active TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv933165	chr5:73981599-73993050	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:73982000-73988800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:73982000-73989000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:73982000-73994400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:73982000-74002200	Weak transcription	Fetal Brain Female	brain
5	chr5:73982000-74017400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr5:73982000-74061800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:73982200-73984600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:73982200-73985000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:73982200-73985200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:73982200-73987200	Weak transcription	Fetal Lung	lung
11	chr5:73982200-74020600	Weak transcription	Fetal Brain Male	brain
12	chr5:73982400-73985200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr5:73982400-73985400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:73982400-73985400	Weak transcription	HSMM	muscle
15	chr5:73982400-73988000	Weak transcription	Fetal Stomach	stomach
16	chr5:73982400-73988400	Weak transcription	Fetal Muscle Leg	muscle
17	chr5:73982400-73989000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:73982400-73989200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr5:73982400-73989200	Weak transcription	HSMMtube	muscle
20	chr5:73982400-73989600	Weak transcription	Fetal Thymus	thymus
21	chr5:73982400-73989800	Weak transcription	Thymus	Thymus
22	chr5:73982400-73993000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr5:73982400-73994600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr5:73982400-73998200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr5:73982400-73999400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr5:73982400-74002200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr5:73982600-73983800	Active TSS	Stomach Smooth Muscle	stomach
28	chr5:73982600-73985000	Weak transcription	Primary B cells from peripheral blood	blood
29	chr5:73982600-73988200	Weak transcription	Ovary	ovary
30	chr5:73982600-73999400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr5:73982800-73983800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr5:73982800-73983800	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr5:73982800-73983800	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr5:73982800-73987000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr5:73983000-73984600	Weak transcription	Primary hematopoietic stem cells	blood
36	chr5:73983000-73985400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr5:73983000-73988200	Weak transcription	Brain Substantia Nigra	brain
38	chr5:73983000-73988400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr5:73983000-73991800	Weak transcription	Colon Smooth Muscle	Colon
40	chr5:73983000-74001000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr5:73983000-74001600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr5:73983000-74017400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr5:73983000-74027000	Weak transcription	Fetal Heart	heart
44	chr5:73983200-73983800	Enhancers	Fetal Intestine Small	intestine
45	chr5:73983200-73983800	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr5:73983200-73984000	Enhancers	HepG2	liver
47	chr5:73983200-73984600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr5:73983200-73984600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr5:73983200-73984600	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr5:73983200-73984600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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