Variant report

Variant	rs184160239
Chromosome Location	chr4:79139481-79139482
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv525530	chr4:79024524-79266563	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv879502	chr4:79052851-79144309	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1010782	chr4:79057839-79387207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv999844	chr4:79092549-79165869	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv879503	chr4:79108589-79163162	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3325085	chr4:79137953-79140501	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3352732	chr4:79138228-79140226	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79129400-79139600	Weak transcription	Pancreas	Pancrea
2	chr4:79131200-79142600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:79134600-79139600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:79135000-79143400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:79136200-79139800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:79137600-79141000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:79137800-79140000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr4:79138600-79139800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:79138600-79142800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:79138600-79143800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:79138800-79141200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:79139200-79140000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr4:79139200-79140000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr4:79139200-79140000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:79139200-79140400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr4:79139200-79142000	Enhancers	HepG2	liver
17	chr4:79139400-79139800	Enhancers	Fetal Intestine Small	intestine
18	chr4:79139400-79140000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr4:79139400-79140000	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr4:79139400-79140000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr4:79139400-79140000	Enhancers	Fetal Heart	heart
22	chr4:79139400-79140000	Enhancers	Fetal Intestine Large	intestine
23	chr4:79139400-79141400	Enhancers	Fetal Lung	lung
24	chr4:79139400-79141800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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