Variant report

Variant	rs1841683
Chromosome Location	chr9:100062831-100062832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10733603	0.85[AFR][1000 genomes]
rs10739337	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10759542	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10759547	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10759605	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10759610	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10759619	0.91[AFR][1000 genomes]
rs10817300	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10817306	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10817361	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10817403	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10817448	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10817492	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10981528	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10981551	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10981560	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10981625	0.85[AFR][1000 genomes]
rs10981889	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12683119	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12683933	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13290555	0.81[EUR][1000 genomes]
rs1462086	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1462087	0.80[AFR][1000 genomes]
rs1462092	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1531439	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1870859	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2061634	0.80[AFR][1000 genomes]
rs2061635	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2255135	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2255139	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2401382	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2447290	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2487874	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2493444	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2502646	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2615144	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2795363	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2795366	1.00[CHB][hapmap]
rs2795369	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2818236	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2818240	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2818241	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2818242	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2818244	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2859564	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2888960	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3994559	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4345679	0.84[AFR][1000 genomes]
rs4437755	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4742683	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4742684	0.83[AFR][1000 genomes]
rs4743074	0.83[AFR][1000 genomes]
rs4743075	0.85[AFR][1000 genomes]
rs6478043	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6478048	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6478059	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7020002	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7023087	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7026287	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7026893	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7029749	0.80[AFR][1000 genomes]
rs725228	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs752243	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7847332	0.85[AFR][1000 genomes]
rs7855385	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7855956	0.91[AFR][1000 genomes]
rs7863530	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7867330	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9299202	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9409139	1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100046600-100069000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:100054800-100069000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:100054800-100069400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:100055000-100069400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr9:100056200-100069200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:100056400-100064000	Weak transcription	NHLF	lung
7	chr9:100057000-100075000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr9:100057400-100075400	Weak transcription	Dnd41	blood
9	chr9:100057600-100069000	Weak transcription	Brain Hippocampus Middle	brain
10	chr9:100057800-100069000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr9:100058000-100063800	Weak transcription	Thymus	Thymus
12	chr9:100058000-100068600	Weak transcription	Brain Anterior Caudate	brain
13	chr9:100058000-100068800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:100058000-100069200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr9:100060200-100064800	Weak transcription	Brain Angular Gyrus	brain
16	chr9:100060200-100068800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:100060200-100069200	Weak transcription	Brain Germinal Matrix	brain
18	chr9:100060200-100071600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr9:100060600-100069200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:100062800-100063000	Enhancers	Spleen	Spleen
21	chr9:100062800-100063400	ZNF genes & repeats	GM12878-XiMat	blood

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