Variant report

Variant	rs184222578
Chromosome Location	chr1:150601204-150601205
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150459471..150461027-chr1:150601141..150603564,2	K562	blood:
2	chr1:150549047..150553046-chr1:150599453..150603954,9	MCF-7	breast:
3	chr1:150600957..150603301-chr1:150669104..150670860,3	MCF-7	breast:
4	chr1:150600620..150604710-chr1:150667156..150670884,6	K562	blood:
5	chr1:150600086..150604497-chr1:150798595..150803015,4	MCF-7	breast:
6	chr1:150600704..150602423-chr1:150722921..150725680,2	MCF-7	breast:
7	chr1:150538995..150557554-chr1:150581886..150604495,126	K562	blood:
8	chr1:150600649..150603708-chr1:150666872..150671304,5	K562	blood:
9	chr1:150458113..150460742-chr1:150599904..150603804,4	MCF-7	breast:
10	chr1:150532182..150537720-chr1:150588719..150604935,28	MCF-7	breast:
11	chr1:150548752..150555486-chr1:150599368..150605834,15	MCF-7	breast:
12	chr1:150523106..150526873-chr1:150601148..150603781,4	K562	blood:
13	chr1:150547986..150553838-chr1:150598744..150606232,19	K562	blood:
14	chr1:150520854..150524966-chr1:150599341..150603058,4	K562	blood:
15	chr1:150601091..150602624-chr1:150945367..150947119,2	MCF-7	breast:
16	chr1:150531290..150540028-chr1:150591374..150603951,29	MCF-7	breast:
17	chr1:150600280..150603071-chr17:56707754..56709707,2	MCF-7	breast:
18	chr1:150600402..150602469-chr12:6642434..6645132,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000143418	Chromatin interaction
ENSG00000225996	Chromatin interaction
ENSG00000255966	Chromatin interaction
ENSG00000143457	Chromatin interaction
ENSG00000203804	Chromatin interaction
ENSG00000143374	Chromatin interaction
ENSG00000231073	Chromatin interaction
ENSG00000264553	Chromatin interaction
ENSG00000143437	Chromatin interaction
ENSG00000264508	Chromatin interaction
ENSG00000143382	Chromatin interaction
ENSG00000111640	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000163131	Chromatin interaction
ENSG00000143384	Chromatin interaction
ENSG00000264584	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006838	chr1:150440214-150722783	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	esv16022	chr1:150601192-150602306	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150600200-150601400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr1:150600200-150603000	Active TSS	Right Ventricle	heart
3	chr1:150600400-150601400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:150600400-150601400	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr1:150600400-150601400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr1:150600400-150601400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
7	chr1:150600400-150601400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr1:150600400-150601600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:150600400-150601600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:150600400-150603200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr1:150600400-150603400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:150600400-150603600	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr1:150600400-150603800	Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr1:150600600-150601400	Flanking Active TSS	Primary T cells from cord blood	blood
15	chr1:150600600-150601400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
16	chr1:150600600-150601400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr1:150600600-150601400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:150600600-150601400	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr1:150600600-150601400	Flanking Active TSS	Brain Anterior Caudate	brain
20	chr1:150600600-150601400	Flanking Active TSS	Rectal Smooth Muscle	rectum
21	chr1:150600600-150601400	Flanking Active TSS	Stomach Smooth Muscle	stomach
22	chr1:150600600-150601400	Flanking Active TSS	Thymus	Thymus
23	chr1:150600600-150601400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr1:150600600-150601400	Flanking Active TSS	Osteobl	bone
25	chr1:150600600-150601600	Flanking Active TSS	Primary B cells from cord blood	blood
26	chr1:150600600-150602800	Active TSS	Esophagus	oesophagus
27	chr1:150600600-150603000	Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr1:150600600-150603200	Active TSS	H9 Cell Line	embryonic stem cell
29	chr1:150600600-150604200	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr1:150600800-150601400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
31	chr1:150600800-150601400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
32	chr1:150600800-150601400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr1:150600800-150601400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
34	chr1:150600800-150601400	Flanking Active TSS	Fetal Kidney	kidney
35	chr1:150600800-150601400	Flanking Active TSS	Fetal Muscle Leg	muscle
36	chr1:150600800-150601400	Flanking Active TSS	Fetal Stomach	stomach
37	chr1:150600800-150601400	Flanking Active TSS	Fetal Thymus	thymus
38	chr1:150600800-150601400	Weak transcription	Spleen	Spleen
39	chr1:150600800-150601400	Flanking Active TSS	NH-A	brain
40	chr1:150600800-150601600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
41	chr1:150600800-150601600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr1:150600800-150601600	Active TSS	Right Atrium	heart
43	chr1:150600800-150602800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr1:150600800-150602800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr1:150600800-150602800	Active TSS	Placenta	Placenta
46	chr1:150600800-150603000	Active TSS	Aorta	Aorta
47	chr1:150600800-150603000	Active TSS	Brain Angular Gyrus	brain
48	chr1:150600800-150603200	Active TSS	Colonic Mucosa	Colon
49	chr1:150600800-150603400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr1:150600800-150603800	Active TSS	HUES6 Cell Line	embryonic stem cell

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