Variant report

Variant	rs184224041
Chromosome Location	chr9:100761607-100761608
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100683227..100687367-chr9:100758311..100762778,5	K562	blood:

Variant related genes	Relation type
ENSG00000136932	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2540773	chr9:100760463-100762115	Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv7209	chr9:100760880-100761657	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100748000-100767200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:100749200-100767200	Weak transcription	Esophagus	oesophagus
3	chr9:100750000-100767200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:100750000-100767400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:100750800-100764000	Weak transcription	Fetal Brain Female	brain
6	chr9:100751000-100761800	Weak transcription	Right Atrium	heart
7	chr9:100751000-100764200	Weak transcription	Fetal Brain Male	brain
8	chr9:100751000-100765200	Weak transcription	Aorta	Aorta
9	chr9:100752000-100784000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:100753000-100767800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:100753000-100768400	Weak transcription	Fetal Heart	heart
12	chr9:100753000-100769000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:100753400-100767200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:100753600-100767200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:100754600-100784200	Strong transcription	Dnd41	blood
16	chr9:100754600-100784400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:100755200-100782200	Strong transcription	HepG2	liver
18	chr9:100755200-100783800	Strong transcription	NHEK	skin
19	chr9:100755400-100763800	Weak transcription	Gastric	stomach
20	chr9:100755400-100783000	Weak transcription	Stomach Mucosa	stomach
21	chr9:100755600-100769200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr9:100755600-100784400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:100755800-100782200	Strong transcription	K562	blood
24	chr9:100756000-100777800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:100756200-100767200	Weak transcription	Colonic Mucosa	Colon
26	chr9:100756400-100763000	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr9:100756400-100767200	Weak transcription	Spleen	Spleen
28	chr9:100756400-100772600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr9:100756400-100783600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr9:100756400-100783800	Strong transcription	Fetal Muscle Trunk	muscle
31	chr9:100756400-100784400	Strong transcription	Fetal Thymus	thymus
32	chr9:100756600-100762400	Weak transcription	Small Intestine	intestine
33	chr9:100756600-100763000	Strong transcription	Hela-S3	cervix
34	chr9:100756600-100767600	Weak transcription	Brain Germinal Matrix	brain
35	chr9:100756600-100785600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr9:100756800-100765600	Strong transcription	Fetal Muscle Leg	muscle
37	chr9:100756800-100771600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr9:100756800-100771800	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr9:100756800-100781200	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr9:100756800-100783000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:100756800-100783400	Strong transcription	HMEC	breast
42	chr9:100757000-100762600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr9:100757000-100762600	Strong transcription	NH-A	brain
44	chr9:100757000-100762800	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr9:100757000-100762800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr9:100757000-100765600	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr9:100757000-100768000	Strong transcription	Left Ventricle	heart
48	chr9:100757000-100769400	Strong transcription	HUVEC	blood vessel
49	chr9:100757000-100771000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr9:100757000-100771600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links