Variant report

Variant	rs1842393
Chromosome Location	chr8:20291541-20291542
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10088104	1.00[ASN][1000 genomes]
rs10089034	1.00[ASN][1000 genomes]
rs10101529	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10110728	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12541184	1.00[ASN][1000 genomes]
rs12542181	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12546283	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12547463	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12547660	1.00[ASN][1000 genomes]
rs12549869	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28398795	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28661722	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28720941	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36091859	1.00[ASN][1000 genomes]
rs4289833	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58127574	1.00[ASN][1000 genomes]
rs60073527	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7000017	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7003050	1.00[ASN][1000 genomes]
rs7004136	1.00[ASN][1000 genomes]
rs7004907	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7005333	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7018201	1.00[ASN][1000 genomes]
rs73617825	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv831256	chr8:20162233-20300224	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2758152	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2759603	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv469890	chr8:20239114-20445136	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv482881	chr8:20239114-20445136	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20280000-20291800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:20283200-20293000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:20287200-20292000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr8:20289600-20292600	Weak transcription	Stomach Mucosa	stomach
5	chr8:20291200-20293000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr8:20291400-20291600	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr8:20291400-20291800	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links