Variant report

Variant	rs184258000
Chromosome Location	chr6:11939109-11939110
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11937988..11940263-chr6:11954946..11957643,2	K562	blood:
2	chr6:11937603..11940541-chr6:11940588..11943697,3	K562	blood:
3	chr6:11938325..11940429-chr6:12012405..12015176,2	K562	blood:
4	chr6:11937603..11940636-chr6:11941347..11943697,3	K562	blood:
5	chr6:11913765..11915487-chr6:11938555..11940311,2	K562	blood:
6	chr6:11930465..11936991-chr6:11937118..11940104,9	K562	blood:
7	chr6:11913987..11915505-chr6:11938167..11940311,2	K562	blood:
8	chr6:11938241..11940254-chr6:12007996..12010839,2	K562	blood:
9	chr6:11934884..11941785-chr6:12006305..12013263,12	K562	blood:

No data

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction
ENSG00000229896	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519516	chr6:11938672-11942371	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11937800-11940200	Weak transcription	Thymus	Thymus
2	chr6:11937800-11940600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:11938000-11939200	Flanking Active TSS	K562	blood
4	chr6:11938200-11939200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:11938400-11939200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:11938400-11939200	Enhancers	Liver	Liver
7	chr6:11938400-11939400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:11938600-11939200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:11938600-11939200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:11938600-11939200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:11938600-11939200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr6:11938600-11939200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:11938600-11939200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:11938600-11939200	Flanking Active TSS	Duodenum Mucosa	Duodenum
15	chr6:11938600-11939200	Enhancers	Pancreas	Pancrea
16	chr6:11938600-11939200	Enhancers	Right Atrium	heart
17	chr6:11938600-11940200	Enhancers	GM12878-XiMat	blood
18	chr6:11938800-11939200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:11938800-11939200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:11938800-11939200	Enhancers	Primary B cells from peripheral blood	blood
21	chr6:11938800-11939200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:11938800-11939200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:11938800-11939200	Enhancers	Esophagus	oesophagus
24	chr6:11938800-11939200	Enhancers	Fetal Muscle Leg	muscle
25	chr6:11938800-11939200	Enhancers	Lung	lung
26	chr6:11938800-11939200	Enhancers	Spleen	Spleen
27	chr6:11938800-11939800	Enhancers	Primary hematopoietic stem cells	blood
28	chr6:11939000-11939200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:11939000-11939200	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr6:11939000-11939200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr6:11939000-11939200	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr6:11939000-11939600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:11939000-11939600	Enhancers	Fetal Intestine Small	intestine
34	chr6:11939000-11939600	Enhancers	HUVEC	blood vessel
35	chr6:11939000-11939800	Enhancers	Fetal Intestine Large	intestine
36	chr6:11939000-11940000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:11939000-11940200	Weak transcription	Fetal Kidney	kidney

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