Variant report

Variant	rs184270740
Chromosome Location	chr13:52810677-52810678
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:39)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:39 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr13:52810380-52810692	Spleen_OC	spleen:	n/a	n/a
2	SMC3	chr13:52810414-52810718	HepG2	liver:	n/a	n/a
3	CTCF	chr13:52810287-52810678	Gliobla	brain:	n/a	n/a
4	RAD21	chr13:52810413-52810696	H1-hESC	embryonic stem cell:	n/a	n/a
5	SMC3	chr13:52810360-52810714	Hela-S3	cervix:	n/a	n/a
6	SMC3	chr13:52810245-52810705	SK-N-SH	brain:	n/a	n/a
7	CTCF	chr13:52810357-52810718	K562	blood:	n/a	n/a
8	CTCF	chr13:52810427-52810677	HepG2	liver:	n/a	n/a
9	RAD21	chr13:52810204-52810879	SK-N-SH	brain:	n/a	n/a
10	ZNF143	chr13:52810358-52810720	GM12878	blood:	n/a	n/a
11	FOXA1	chr13:52810269-52810740	HepG2	liver:	n/a	n/a
12	CTCF	chr13:52810426-52810854	A549	lung:	n/a	n/a
13	RUNX3	chr13:52810425-52810736	GM12878	blood:	n/a	n/a
14	CTCF	chr13:52810338-52810730	A549	lung:	n/a	n/a
15	CTCF	chr13:52810540-52810690	BJ	skin:	n/a	n/a
16	CTCF	chr13:52810540-52810690	NHEK	skin:	n/a	n/a
17	CTCF	chr13:52810540-52810690	GM12878	blood:	n/a	n/a
18	CTCF	chr13:52810560-52810710	BE2_C	brain:	n/a	n/a
19	FOXP2	chr13:52810246-52810678	SK-N-MC	brain:	n/a	n/a
20	CTCF	chr13:52810400-52810694	A549	lung:	n/a	n/a
21	RXRA	chr13:52810361-52810681	GM12878	blood:	n/a	n/a
22	RAD21	chr13:52810417-52810689	HepG2	liver:	n/a	n/a
23	RAD21	chr13:52810346-52810727	IMR90	lung:	n/a	n/a
24	CTCF	chr13:52810365-52810684	Medullo	brain:	n/a	n/a
25	RAD21	chr13:52810415-52810719	K562	blood:	n/a	n/a
26	CTCF	chr13:52810205-52810946	SK-N-SH	brain:	n/a	n/a
27	RAD21	chr13:52810413-52810721	GM12878	blood:	n/a	n/a
28	RAD21	chr13:52810354-52810722	Hela-S3	cervix:	n/a	n/a
29	CTCF	chr13:52810425-52810696	Lung_OC	lung:	n/a	n/a
30	FOXA2	chr13:52810302-52810719	A549	lung:	n/a	n/a
31	RAD21	chr13:52810355-52810715	HepG2	liver:	n/a	n/a
32	CTCF	chr13:52810403-52810682	GM13977	blood:	n/a	n/a
33	RAD21	chr13:52810355-52810717	H1-hESC	embryonic stem cell:	n/a	n/a
34	CTCF	chr13:52810242-52810681	A549	lung:	n/a	n/a
35	CTCF	chr13:52810349-52810733	GM12878	blood:	n/a	n/a
36	CTCF	chr13:52810540-52810690	K562	blood:	n/a	n/a
37	CTCF	chr13:52810404-52810677	K562	blood:	n/a	n/a
38	CTCF	chr13:52810355-52810731	IMR90	lung:	n/a	n/a
39	FOXP2	chr13:52810348-52810683	SK-N-MC	brain:	n/a	n/a

No data

Variant related genes	Relation type
TPTE2P2	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530718	chr13:52291802-52832752	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv428288	chr13:52728370-53068132	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv819887	chr13:52772113-52926921	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv983588	chr13:52772461-52833538	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
8	nsv900083	chr13:52783120-52885838	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv2453475	chr13:52803686-52895029	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links