Variant report

Variant	rs184311427
Chromosome Location	chr15:62359558-62359559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:62352114..62355489-chr15:62359291..62363476,4	MCF-7	breast:
2	chr15:62160043..62163025-chr15:62359293..62361455,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259251	Chromatin interaction
ENSG00000129003	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457176	chr15:62178695-62519658	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv569643	chr15:62178695-62519658	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv471247	chr15:62202481-62519658	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv569646	chr15:62202482-62519658	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1044748	chr15:62276183-62521856	Active TSS Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv542405	chr15:62276183-62521856	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv457178	chr15:62340126-62394324	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv569652	chr15:62340126-62394324	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv1560	chr15:62354264-62399304	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	esv3341159	chr15:62359285-62361833	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3358286	chr15:62359310-62361608	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:62356600-62360000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
2	chr15:62357200-62360400	Weak transcription	Hela-S3	cervix
3	chr15:62358400-62359600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
4	chr15:62358600-62359600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
5	chr15:62358600-62359800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:62358600-62360000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr15:62358600-62360000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
8	chr15:62358600-62360000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:62358600-62360000	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
10	chr15:62358600-62360000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
11	chr15:62358600-62360000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:62358600-62360000	Flanking Active TSS	Duodenum Mucosa	Duodenum
13	chr15:62358600-62360200	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
14	chr15:62358600-62360200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:62358600-62360200	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
16	chr15:62358600-62360200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
17	chr15:62358600-62361000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
18	chr15:62358800-62359600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
19	chr15:62358800-62359600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:62358800-62359600	Flanking Bivalent TSS/Enh	Primary T killer naive cells fromperipheralblood	blood
21	chr15:62358800-62359600	Flanking Active TSS	Brain Hippocampus Middle	brain
22	chr15:62358800-62359800	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
23	chr15:62358800-62359800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
24	chr15:62358800-62359800	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr15:62358800-62359800	Active TSS	Stomach Mucosa	stomach
26	chr15:62358800-62359800	Flanking Bivalent TSS/Enh	Osteobl	bone
27	chr15:62358800-62360000	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
28	chr15:62358800-62360000	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
29	chr15:62358800-62360000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
30	chr15:62358800-62360000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
31	chr15:62358800-62360000	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
32	chr15:62358800-62360000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:62358800-62360000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
34	chr15:62358800-62360000	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
35	chr15:62358800-62360000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
36	chr15:62358800-62360000	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
37	chr15:62358800-62360000	Flanking Active TSS	HepG2	liver
38	chr15:62358800-62360000	Flanking Bivalent TSS/Enh	NH-A	brain
39	chr15:62358800-62360200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr15:62358800-62360200	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr15:62358800-62360800	Active TSS	Esophagus	oesophagus
42	chr15:62358800-62360800	Active TSS	Gastric	stomach
43	chr15:62358800-62360800	Flanking Active TSS	HMEC	breast
44	chr15:62358800-62361000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr15:62358800-62361000	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr15:62358800-62361000	Active TSS	Aorta	Aorta
47	chr15:62358800-62361000	Active TSS	Pancreas	Pancrea
48	chr15:62358800-62361200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr15:62358800-62361200	Active TSS	Pancreatic Islets	Pancreatic Islet
50	chr15:62358800-62361400	Active TSS	Brain Inferior Temporal Lobe	brain

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