Variant report

Variant	rs184346789
Chromosome Location	chr4:62739982-62739983
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829949	chr4:62615637-62761629	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428760	chr4:62649399-62824542	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv999023	chr4:62739674-62784921	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62724600-62742800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:62737800-62740200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr4:62739000-62740000	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr4:62739000-62740200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:62739200-62740000	Enhancers	Brain Hippocampus Middle	brain
6	chr4:62739200-62740200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:62739600-62740000	Enhancers	Brain Cingulate Gyrus	brain
8	chr4:62739600-62742600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:62739800-62740000	Enhancers	Brain Anterior Caudate	brain
10	chr4:62739800-62743800	Weak transcription	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links