The 2.0 version of rSNPBase

Variant report

Variant rs184355816
Chromosome Location chr1:220815548-220815549
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220767800-220826400 Weak transcription Duodenum Smooth Muscle Duodenum
2 chr1:220778800-220837200 Weak transcription NHEK skin
3 chr1:220782800-220825800 Weak transcription Fetal Brain Male brain
4 chr1:220784200-220836600 Weak transcription Fetal Lung lung
5 chr1:220791200-220828600 Weak transcription Right Ventricle heart
6 chr1:220791200-220841200 Weak transcription HMEC breast
7 chr1:220792000-220834200 Weak transcription Pancreatic Islets Pancreatic Islet
8 chr1:220796200-220827800 Weak transcription Gastric stomach
9 chr1:220798000-220836400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr1:220798800-220826200 Weak transcription Brain Angular Gyrus brain
11 chr1:220799600-220827000 Weak transcription Stomach Smooth Muscle stomach
12 chr1:220800000-220837800 Weak transcription Esophagus oesophagus
13 chr1:220800800-220826400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr1:220802400-220826400 Weak transcription H9 Cell Line embryonic stem cell
15 chr1:220805200-220827200 Weak transcription ES-I3 Cell Line embryonic stem cell
16 chr1:220807400-220816600 Strong transcription HUES64 Cell Line embryonic stem cell
17 chr1:220807400-220829800 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr1:220807800-220828800 Weak transcription Colon Smooth Muscle Colon
19 chr1:220807800-220836400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr1:220808600-220815800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr1:220808600-220816800 Strong transcription iPS-20b Cell Line embryonic stem cell
22 chr1:220809400-220823200 Weak transcription Left Ventricle heart
23 chr1:220809400-220827000 Weak transcription Brain Anterior Caudate brain
24 chr1:220810800-220826200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr1:220811400-220816600 Strong transcription HUES48 Cell Line embryonic stem cell
26 chr1:220811800-220816800 Strong transcription Fetal Muscle Trunk muscle
27 chr1:220811800-220825400 Weak transcription iPS-18 Cell Line embryonic stem cell
28 chr1:220812200-220816000 Strong transcription Cortex derived primary cultured neurospheres brain
29 chr1:220812800-220815600 Strong transcription Fetal Brain Female brain
30 chr1:220813600-220816000 Strong transcription Breast Myoepithelial Primary Cells Breast
31 chr1:220813600-220836000 Weak transcription Brain Cingulate Gyrus brain
32 chr1:220814000-220816000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr1:220814000-220817200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr1:220814000-220820000 Weak transcription Fetal Adrenal Gland Adrenal Gland
35 chr1:220814600-220816200 Strong transcription Aorta Aorta
36 chr1:220814600-220816600 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
37 chr1:220814800-220815800 Genic enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr1:220814800-220815800 Strong transcription Brain Germinal Matrix brain
39 chr1:220814800-220816800 Strong transcription Fetal Muscle Leg muscle
40 chr1:220815000-220815600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr1:220815000-220816200 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell
42 chr1:220815000-220816400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
43 chr1:220815000-220816600 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
44 chr1:220815000-220827800 Weak transcription iPS-15b Cell Line embryonic stem cell
45 chr1:220815200-220815800 ZNF genes & repeats H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr1:220815200-220815800 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
47 chr1:220815200-220816000 ZNF genes & repeats iPS DF 19.11 Cell Line embryonic stem cell
48 chr1:220815200-220816200 Strong transcription H1 Cell Line embryonic stem cell
49 chr1:220815200-220816200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr1:220815200-220816200 ZNF genes & repeats Fetal Stomach stomach

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Last update: Aug 31, 2015