Variant report

Variant	rs184377534
Chromosome Location	chrX:55083702-55083703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chrX:55083675-55084462	K562	blood:	n/a	n/a
2	POLR2A	chrX:55083698-55083767	HUVEC	blood vessel:	n/a	n/a
3	FOS	chrX:55083578-55083938	HUVEC	blood vessel:	n/a	n/a
4	RAD21	chrX:55083297-55084663	SK-N-SH	brain:	n/a	n/a
5	RCOR1	chrX:55083562-55083825	K562	blood:	n/a	n/a
6	JUND	chrX:55083701-55084453	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:54838735..54840805-chrX:55081585..55084393,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234466	TF binding region
ENSG00000221716	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386096	chrX:55083379-55083718	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55082800-55084600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chrX:55082800-55084600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chrX:55083000-55083800	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chrX:55083000-55083800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chrX:55083000-55084200	Enhancers	Primary T cells fromperipheralblood	blood
6	chrX:55083000-55084200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chrX:55083000-55084200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chrX:55083400-55083800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chrX:55083400-55083800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chrX:55083400-55083800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chrX:55083400-55084000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chrX:55083400-55084000	Enhancers	Fetal Kidney	kidney
13	chrX:55083400-55084200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chrX:55083400-55084200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chrX:55083400-55084200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chrX:55083400-55084200	Enhancers	Fetal Lung	lung
17	chrX:55083400-55084200	Enhancers	Osteobl	bone
18	chrX:55083400-55084400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chrX:55083400-55084600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chrX:55083400-55085800	Enhancers	K562	blood
21	chrX:55083600-55083800	Enhancers	Primary T cells from cord blood	blood
22	chrX:55083600-55083800	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chrX:55083600-55083800	Active TSS	Brain Anterior Caudate	brain
24	chrX:55083600-55083800	Enhancers	Brain Inferior Temporal Lobe	brain
25	chrX:55083600-55083800	Enhancers	Brain Substantia Nigra	brain
26	chrX:55083600-55083800	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chrX:55083600-55083800	Enhancers	HUVEC	blood vessel
28	chrX:55083600-55084000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chrX:55083600-55084200	Enhancers	Primary B cells from peripheral blood	blood
30	chrX:55083600-55084200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chrX:55083600-55084200	Enhancers	Adipose Nuclei	Adipose
32	chrX:55083600-55084200	Enhancers	Fetal Brain Male	brain
33	chrX:55083600-55084200	Active TSS	Pancreatic Islets	Pancreatic Islet
34	chrX:55083600-55084200	Enhancers	Ovary	ovary
35	chrX:55083600-55084200	Enhancers	Dnd41	blood

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