Variant report

Variant	rs184398814
Chromosome Location	chr17:16926728-16926729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MPRIP-1	chr17:16926378-16926772	NONHSAT146035

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058863	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv543227	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv907727	chr17:16892265-16938582	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv543231	chr17:16926227-16950644	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16918800-16930800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr17:16922400-16928000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr17:16922800-16928800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr17:16923600-16926800	Enhancers	Brain Anterior Caudate	brain
5	chr17:16923800-16928200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr17:16923800-16929000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr17:16923800-16929000	Weak transcription	NHEK	skin
8	chr17:16924200-16926800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr17:16924200-16926800	Enhancers	Brain Cingulate Gyrus	brain
10	chr17:16924200-16926800	Enhancers	Brain Hippocampus Middle	brain
11	chr17:16924200-16926800	Enhancers	Brain Substantia Nigra	brain
12	chr17:16924200-16929000	Weak transcription	Lung	lung
13	chr17:16924800-16927400	Enhancers	Fetal Intestine Large	intestine
14	chr17:16925000-16930800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr17:16925200-16930600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr17:16925200-16931000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr17:16925400-16928000	Weak transcription	Adipose Nuclei	Adipose
18	chr17:16925400-16928400	Weak transcription	Fetal Lung	lung
19	chr17:16925400-16929000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr17:16925400-16930800	Weak transcription	NH-A	brain
21	chr17:16925400-16931000	Enhancers	A549	lung
22	chr17:16925600-16928200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr17:16925600-16930800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr17:16925600-16930800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr17:16925600-16931800	Weak transcription	Osteobl	bone
26	chr17:16925800-16929400	Enhancers	Fetal Intestine Small	intestine
27	chr17:16925800-16930600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr17:16925800-16930800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr17:16926000-16927400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr17:16926000-16927800	Weak transcription	Fetal Heart	heart
31	chr17:16926000-16928000	Weak transcription	Fetal Stomach	stomach
32	chr17:16926000-16928000	Weak transcription	Right Ventricle	heart
33	chr17:16926000-16928200	Weak transcription	Right Atrium	heart
34	chr17:16926000-16928600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr17:16926000-16928600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr17:16926000-16930600	Weak transcription	Esophagus	oesophagus
37	chr17:16926000-16930600	Weak transcription	HMEC	breast
38	chr17:16926000-16930800	Weak transcription	Colonic Mucosa	Colon
39	chr17:16926000-16930800	Weak transcription	Spleen	Spleen
40	chr17:16926000-16931400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr17:16926200-16927400	Enhancers	Hela-S3	cervix
42	chr17:16926200-16928000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr17:16926200-16928000	Weak transcription	Fetal Muscle Leg	muscle
44	chr17:16926200-16928000	Weak transcription	Pancreas	Pancrea
45	chr17:16926200-16928200	Weak transcription	Gastric	stomach
46	chr17:16926200-16928200	Weak transcription	Left Ventricle	heart
47	chr17:16926200-16928200	Weak transcription	Stomach Mucosa	stomach
48	chr17:16926200-16928600	Weak transcription	HSMM	muscle
49	chr17:16926200-16930800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr17:16926400-16928400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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