Variant report

Variant	rs184399
Chromosome Location	chr1:213680952-213680953
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs320477	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs452814	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213679800-213681400	Enhancers	Brain Germinal Matrix	brain
2	chr1:213680400-213681000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:213680400-213682000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr1:213680600-213681000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:213680800-213681000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:213680800-213681200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr1:213680800-213681400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr1:213680800-213682000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr1:213680800-213682200	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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