Variant report

Variant	rs184411900
Chromosome Location	chr7:104758951-104758952
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:104758047-104759648	MCF-7	breast:	n/a	n/a
2	POLR2A	chr7:104756442-104759276	GM12891	blood:	n/a	n/a
3	POLR2A	chr7:104757864-104759205	SK-N-SH	brain:	n/a	n/a
4	POLR2A	chr7:104750548-104759120	K562	blood:	n/a	n/a
5	POLR2A	chr7:104758791-104759444	GM12878	blood:	n/a	n/a
6	POLR2A	chr7:104758004-104759016	SK-N-MC	brain:	n/a	n/a
7	POLR2A	chr7:104758545-104759148	U87	brain:	n/a	n/a
8	POLR2A	chr7:104757084-104759770	GM12878	blood:	n/a	n/a
9	POLR2A	chr7:104758845-104759092	Hela-S3	cervix:	n/a	n/a
10	POLR2A	chr7:104758664-104759142	U87	brain:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:104755441..104758675-chr7:104758800..104762280,3	K562	blood:
2	chr7:104758738..104761614-chr7:104770602..104772460,2	K562	blood:
3	chr7:104758883..104761697-chr7:104762502..104764624,2	MCF-7	breast:
4	chr7:104757007..104759673-chr7:105027481..105029991,2	MCF-7	breast:
5	chr7:104753338..104755399-chr7:104758513..104760360,2	K562	blood:
6	chr7:104758250..104759925-chr7:105171993..105174192,2	MCF-7	breast:

No data

Variant related genes	Relation type
SRPK2	TF binding region
ENSG00000135249	Chromatin interaction
ENSG00000135250	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888927	chr7:104614664-104781644	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104678000-104812200	Strong transcription	Dnd41	blood
2	chr7:104681200-104760400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr7:104685600-104759000	Strong transcription	Primary B cells from peripheral blood	blood
4	chr7:104703600-104759000	Strong transcription	Fetal Intestine Large	intestine
5	chr7:104706000-104760200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:104722200-104759400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr7:104727800-104759200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:104727800-104759800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:104727800-104760400	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr7:104728000-104760200	Strong transcription	Rectal Mucosa Donor 31	rectum
11	chr7:104738800-104760200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:104739000-104759200	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr7:104740200-104759000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:104740200-104759400	Strong transcription	Primary B cells from cord blood	blood
15	chr7:104740400-104759200	Strong transcription	Primary T cells from cord blood	blood
16	chr7:104740400-104787400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:104740800-104760200	Strong transcription	HMEC	breast
18	chr7:104742200-104759800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr7:104742400-104760200	Strong transcription	Skeletal Muscle Female	skeletal muscle
20	chr7:104750200-104777000	Weak transcription	Right Atrium	heart
21	chr7:104752800-104759400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr7:104752800-104763200	Weak transcription	Fetal Heart	heart
23	chr7:104752800-104807400	Weak transcription	Fetal Brain Male	brain
24	chr7:104753200-104760800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr7:104753600-104759000	Strong transcription	Brain Anterior Caudate	brain
26	chr7:104753600-104759600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr7:104753600-104759800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr7:104753600-104768000	Weak transcription	Psoas Muscle	Psoas
29	chr7:104753800-104759000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr7:104753800-104759000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr7:104753800-104759000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr7:104753800-104759200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr7:104753800-104759200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr7:104753800-104759200	Weak transcription	Ovary	ovary
35	chr7:104753800-104762000	Weak transcription	NHEK	skin
36	chr7:104753800-104763800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr7:104753800-104764400	Weak transcription	Esophagus	oesophagus
38	chr7:104753800-104764400	Weak transcription	Fetal Stomach	stomach
39	chr7:104753800-104764400	Weak transcription	Pancreas	Pancrea
40	chr7:104753800-104764400	Weak transcription	Spleen	Spleen
41	chr7:104753800-104764600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr7:104753800-104765800	Weak transcription	Right Ventricle	heart
43	chr7:104753800-104766200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr7:104753800-104766200	Weak transcription	Gastric	stomach
45	chr7:104753800-104768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr7:104753800-104772200	Weak transcription	Aorta	Aorta
47	chr7:104753800-104772800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr7:104753800-104776600	Weak transcription	Stomach Mucosa	stomach
49	chr7:104753800-104822000	Weak transcription	Small Intestine	intestine
50	chr7:104754000-104759000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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