Variant report

Variant	rs184420399
Chromosome Location	chr4:166005609-166005610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026152	chr4:165622244-166027447	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv537336	chr4:165622244-166027447	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1021905	chr4:165852926-166212878	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv533191	chr4:165879671-166171638	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	esv1835468	chr4:165969625-166023258	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
8	esv1840053	chr4:165969625-166023258	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
9	nsv881168	chr4:165975122-166196438	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
10	nsv511271	chr4:166000195-166010815	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	esv1000719	chr4:166000402-166010151	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	esv3464603	chr4:166000902-166007000	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv3521733	chr4:166001152-166006050	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	n/a
14	esv3464598	chr4:166001527-166006375	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	esv3521736	chr4:166001802-166006200	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
16	esv3521735	chr4:166002083-166006075	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
17	esv2558277	chr4:166002192-166005928	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
18	esv3464602	chr4:166002203-166005863	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	n/a
19	esv3521734	chr4:166002210-166006592	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
20	nsv596043	chr4:166003471-166007269	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
21	esv1806654	chr4:166003471-166010815	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
22	esv1830338	chr4:166003471-166010815	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
23	esv1841293	chr4:166003471-166010815	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
24	esv1847305	chr4:166003471-166010815	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
25	nsv596046	chr4:166003733-166007269	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:165980600-166005800	Weak transcription	Aorta	Aorta
2	chr4:165980600-166007000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:165985000-166007200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:165990600-166007000	Weak transcription	Right Ventricle	heart
5	chr4:165990800-166026600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:165991600-166008400	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:165993600-166007000	Weak transcription	Fetal Lung	lung
8	chr4:165994200-166007800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:165994200-166008600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:165994400-166006600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr4:165994600-166006000	Weak transcription	Placenta	Placenta
12	chr4:165994600-166032800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr4:165994800-166006400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:165994800-166007400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:165995400-166019600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr4:165995800-166007000	Weak transcription	K562	blood
17	chr4:165996000-166007000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:165996000-166019800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr4:165996000-166033000	Weak transcription	Thymus	Thymus
20	chr4:165996200-166007000	Weak transcription	Fetal Kidney	kidney
21	chr4:165996200-166008200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr4:165996600-166006400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr4:165996600-166009400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr4:165996800-166032600	Weak transcription	Hela-S3	cervix
25	chr4:165997200-166006000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr4:165997400-166018600	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr4:165997800-166007000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr4:165997800-166007000	Weak transcription	GM12878-XiMat	blood
29	chr4:165997800-166032400	Weak transcription	Fetal Brain Male	brain
30	chr4:165998000-166006600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr4:165998000-166006800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr4:165998800-166007000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr4:165998800-166007000	Weak transcription	Brain Germinal Matrix	brain
34	chr4:165999000-166007200	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr4:165999000-166007400	Weak transcription	HMEC	breast
36	chr4:165999000-166009000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr4:165999000-166022800	Weak transcription	HUVEC	blood vessel
38	chr4:165999000-166023000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr4:165999200-166009000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr4:165999200-166020600	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr4:165999400-166007000	Weak transcription	HSMMtube	muscle
42	chr4:165999400-166007800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr4:165999400-166008200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr4:165999400-166033200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr4:165999600-166007000	Weak transcription	NHEK	skin
46	chr4:165999600-166007200	Weak transcription	Fetal Thymus	thymus
47	chr4:165999600-166033000	Weak transcription	Osteobl	bone
48	chr4:166000600-166032800	Weak transcription	NHDF-Ad	bronchial
49	chr4:166000800-166007400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr4:166001000-166005800	Weak transcription	Brain Hippocampus Middle	brain

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