Variant report

Variant	rs184457344
Chromosome Location	chr6:109541937-109541938
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109541416..109543560-chr6:109616012..109618470,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527657	chr6:109533385-109579675	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3413723	chr6:109541684-109544232	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109517200-109544800	Weak transcription	Psoas Muscle	Psoas
2	chr6:109535200-109543000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:109535200-109544000	Weak transcription	Aorta	Aorta
4	chr6:109535200-109545800	Weak transcription	Right Atrium	heart
5	chr6:109536000-109550800	Weak transcription	HSMMtube	muscle
6	chr6:109541600-109542000	Enhancers	Fetal Thymus	thymus
7	chr6:109541600-109542000	Enhancers	K562	blood
8	chr6:109541600-109542400	Enhancers	Primary T cells from cord blood	blood
9	chr6:109541600-109542400	Enhancers	Stomach Mucosa	stomach
10	chr6:109541600-109543200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:109541600-109543400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:109541800-109542000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:109541800-109542200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:109541800-109542200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:109541800-109542200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:109541800-109542400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:109541800-109542400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr6:109541800-109542400	Enhancers	Adipose Nuclei	Adipose
19	chr6:109541800-109542400	Enhancers	Fetal Kidney	kidney
20	chr6:109541800-109542400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr6:109541800-109542600	Enhancers	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links