Variant report

Variant	rs184463674
Chromosome Location	chr5:36887567-36887568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36876398..36879013-chr5:36886021..36888865,3	MCF-7	breast:
2	chr5:36728405..36730840-chr5:36886021..36888598,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164190	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv532133	chr5:36834932-36906436	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
5	nsv530225	chr5:36886635-37331912	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv830264	chr5:36887002-36941494	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36879200-36889400	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr5:36879600-36889400	Weak transcription	HSMMtube	muscle
3	chr5:36879800-36891400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:36880000-36889000	Weak transcription	Brain Anterior Caudate	brain
5	chr5:36880000-36891200	Weak transcription	Fetal Brain Female	brain
6	chr5:36880000-36897400	Weak transcription	NHLF	lung
7	chr5:36880400-36897800	Weak transcription	HUVEC	blood vessel
8	chr5:36881000-36899800	Weak transcription	Brain Substantia Nigra	brain
9	chr5:36881000-36900600	Weak transcription	Osteobl	bone
10	chr5:36881200-36890600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:36881200-36892400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:36881200-36900400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:36881400-36897400	Weak transcription	NHDF-Ad	bronchial
14	chr5:36881800-36895400	Weak transcription	Fetal Kidney	kidney
15	chr5:36882400-36899800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:36882600-36887600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr5:36882800-36891400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr5:36884000-36892000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr5:36884200-36889600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr5:36884600-36897200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr5:36884800-36887800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr5:36885000-36899200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr5:36885400-36888000	Enhancers	Liver	Liver
24	chr5:36885600-36888400	Enhancers	Fetal Heart	heart
25	chr5:36885800-36890800	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr5:36885800-36890800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr5:36886000-36887600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr5:36886000-36888400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr5:36886000-36894800	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr5:36886200-36887800	Weak transcription	Brain Germinal Matrix	brain
31	chr5:36886200-36889600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr5:36886200-36889800	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr5:36886200-36891400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr5:36886200-36891400	Weak transcription	Aorta	Aorta
35	chr5:36886200-36891400	Weak transcription	HSMM	muscle
36	chr5:36886200-36893200	Weak transcription	Placenta	Placenta
37	chr5:36886200-36893400	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr5:36886200-36893400	Weak transcription	Fetal Muscle Trunk	muscle
39	chr5:36886200-36893600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr5:36886200-36894800	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr5:36886200-36895000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr5:36886200-36897600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr5:36886200-36899000	Weak transcription	Fetal Thymus	thymus
44	chr5:36886400-36888000	Weak transcription	Colonic Mucosa	Colon
45	chr5:36886400-36888200	Weak transcription	Fetal Lung	lung
46	chr5:36886400-36889400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr5:36886400-36889600	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr5:36886400-36889600	Enhancers	Primary T cells from cord blood	blood
49	chr5:36886400-36890800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr5:36886400-36890800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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