Variant report

Variant	rs184504794
Chromosome Location	chr20:13692850-13692851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061303	chr20:13395546-13810990	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916202	chr20:13421724-14043615	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1059817	chr20:13422602-13807968	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1061323	chr20:13551004-13746346	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv912689	chr20:13570331-14155881	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv531478	chr20:13580524-13814797	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1059221	chr20:13589432-13977327	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv531479	chr20:13632491-14434432	Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	esv1793063	chr20:13691562-13708788	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:13689000-13694400	Weak transcription	Primary B cells from cord blood	blood
2	chr20:13690000-13694000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr20:13690200-13696400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr20:13690400-13697000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr20:13690600-13694000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr20:13690600-13694000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr20:13690600-13695600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr20:13690600-13706200	Weak transcription	Pancreas	Pancrea
9	chr20:13691000-13693800	Weak transcription	Left Ventricle	heart
10	chr20:13691200-13695400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr20:13691400-13693600	Weak transcription	Fetal Intestine Large	intestine
12	chr20:13691400-13694000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr20:13691400-13694200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr20:13691400-13694200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr20:13691400-13694200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr20:13691400-13694200	Weak transcription	Osteobl	bone
17	chr20:13691400-13696000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr20:13691400-13696200	Weak transcription	Right Ventricle	heart
19	chr20:13691600-13694400	Weak transcription	HSMM	muscle
20	chr20:13691600-13694600	Weak transcription	NH-A	brain
21	chr20:13691600-13695000	Strong transcription	Skeletal Muscle Male	skeletal muscle
22	chr20:13691600-13696000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr20:13691800-13694200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr20:13691800-13695400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr20:13691800-13699000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr20:13691800-13706200	Weak transcription	Aorta	Aorta
27	chr20:13691800-13708000	Weak transcription	Fetal Brain Male	brain
28	chr20:13692000-13694400	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr20:13692000-13696000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr20:13692200-13693000	ZNF genes & repeats	Primary T cells from cord blood	blood
31	chr20:13692200-13693800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr20:13692200-13693800	Weak transcription	Gastric	stomach
33	chr20:13692200-13694000	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr20:13692200-13694000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr20:13692200-13694000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr20:13692200-13694000	Weak transcription	Fetal Intestine Small	intestine
37	chr20:13692200-13694000	Weak transcription	Fetal Stomach	stomach
38	chr20:13692200-13694200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr20:13692200-13694200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr20:13692200-13694200	Weak transcription	HepG2	liver
41	chr20:13692200-13694400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr20:13692200-13694400	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr20:13692200-13694400	Weak transcription	Brain Hippocampus Middle	brain
44	chr20:13692200-13695200	Weak transcription	Fetal Lung	lung
45	chr20:13692200-13695600	Weak transcription	Thymus	Thymus
46	chr20:13692200-13696000	Weak transcription	Brain Angular Gyrus	brain
47	chr20:13692200-13696000	Weak transcription	Lung	lung
48	chr20:13692200-13696000	Weak transcription	Ovary	ovary
49	chr20:13692200-13696000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr20:13692200-13696200	Weak transcription	Brain Anterior Caudate	brain

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