Variant report

Variant	rs1845435
Chromosome Location	chr3:86611015-86611016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1845436	1.00[AMR][1000 genomes]
rs59819263	1.00[AMR][1000 genomes]
rs62262285	1.00[AMR][1000 genomes]
rs62262317	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1829775	chr3:86534927-86822085	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1845435	SELT	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86603800-86611200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:86609600-86611400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:86610000-86611200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:86610400-86611200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:86611000-86611600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:86611000-86611800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:86611000-86612000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:86611000-86613000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:86611000-86613000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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