Variant report

Variant	rs184543817
Chromosome Location	chr10:48807253-48807254
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:48807252-48807302	H1-hESC	embryonic stem cell:	embryo
2	chr10:48807252-48807302	NB4	blood:	n/a
3	chr10:48807252-48807302	HEK293	kidney:	embryo
4	chr10:48807252-48807302	HMEC	breast:	n/a
5	chr10:48807252-48807302	SK-N-SH_RA	brain:	n/a
6	chr10:48807252-48807302	BE2_C	brain:	n/a
7	chr10:48807252-48807302	ovcar-3	ovarian:	n/a
8	chr10:48807252-48807302	AoSMC	blood vessel:	n/a
9	chr10:48807252-48807302	PFSK-1	brain:	n/a
10	chr10:48807252-48807302	NHBE	bronchial:	n/a
11	chr10:48807252-48807302	RPTEC	kidney:	n/a
12	chr10:48807252-48807302	GM12878	blood:	n/a
13	chr10:48807252-48807302	NH-A	brain:	n/a
14	chr10:48807252-48807302	AG09319	gingival:	n/a
15	chr10:48807252-48807302	HL-60	blood:	n/a
16	chr10:48807252-48807302	A549	lung:	n/a
17	chr10:48807252-48807302	GM12891	blood:	n/a
18	chr10:48807252-48807302	HRPEpiC	eye:	n/a
19	chr10:48807252-48807302	AG04449	skin:	fetal
20	chr10:48807252-48807302	CMK	blood:	n/a
21	chr10:48807252-48807302	GM06990	blood:	n/a
22	chr10:48807252-48807302	HRCEpiC	kidney:	n/a
23	chr10:48807252-48807302	AG04450	lung:	fetal
24	chr10:48807252-48807302	GM12892	blood:	n/a
25	chr10:48807252-48807302	SAEC	small airway:	n/a
26	chr10:48807252-48807302	NHDF-neo	bronchial:	n/a
27	chr10:48807252-48807302	HCT-116	colon:	n/a
28	chr10:48807252-48807302	HIPEpiC	eye:	n/a
29	chr10:48807252-48807302	HNPCEpiC	eye:	n/a
30	chr10:48807252-48807302	HUVEC	blood vessel:	n/a
31	chr10:48807252-48807302	PrEC	prostate:	n/a
32	chr10:48807252-48807302	Hepatocyte	liver:	n/a
33	chr10:48807252-48807302	Caco-2	colon:	n/a
34	chr10:48807252-48807302	ProgFib	skin:	n/a
35	chr10:48807252-48807302	HepG2	liver:	n/a
36	chr10:48807252-48807302	HRE	kidney:	n/a
37	chr10:48807252-48807302	ECC-1	luminal epithelium:	n/a
38	chr10:48807252-48807302	MCF-7	breast:	n/a
39	chr10:48807252-48807302	U87	brain:	n/a
40	chr10:48807252-48807302	HCF	heart:	n/a
41	chr10:48807252-48807302	AG10803	skin:	n/a
42	chr10:48807252-48807302	T-47D	breast:	n/a
43	chr10:48807252-48807302	SK-N-MC	brain:	n/a
44	chr10:48807252-48807302	MCF10A-Er-Src	breast:	n/a
45	chr10:48807252-48807302	GM19239	blood:	n/a
46	chr10:48807252-48807302	SKMC	muscle:	n/a
47	chr10:48807252-48807302	HCM	heart:	n/a
48	chr10:48807252-48807302	HAEpiC	amniotic membrane:	n/a
49	chr10:48807252-48807302	K562	blood:	n/a
50	chr10:48807252-48807302	PANC-1	pancreas:	n/a

No data

Variant related genes	Relation type
PTPN20B	CpG island

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758218	chr10:48593396-49299273	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2759748	chr10:48593396-49299273	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1048083	chr10:48663587-49292521	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv895347	chr10:48664066-49299273	Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1041008	chr10:48714571-49287591	Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1051932	chr10:48714571-49292521	Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1039125	chr10:48714571-49299273	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv1045833	chr10:48722696-49292521	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv1048052	chr10:48771938-49292521	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links