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Variant report
Variant
rs184552867
Chromosome Location
chr11:45154982-45154983
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:4)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:4 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr11:45153527..45160380-chr11:45165355..45169670,10
MCF-7
breast:
2
chr11:45141259..45143495-chr11:45154866..45157797,2
MCF-7
breast:
3
chr11:45154187..45156497-chr11:45867707..45870447,2
MCF-7
breast:
4
chr11:45153382..45155390-chr11:45160879..45163088,3
K562
blood:
No data
No data
No data
Variant related genes
Relation type
ENSG00000121671
Chromatin interaction
ENSG00000019485
Chromatin interaction
Extended variants information (count: 2 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv825852
chr11:45141386-45228580
Bivalent/Poised TSS Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'
TF binding regionCpG islandChromatin interactive regionlncRNA
18 gene(s)
inside rSNPs
diseases
2
nsv541025
chr11:45154352-45193352
Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats
TF binding regionCpG islandChromatin interactive region
9 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links