Variant report

Variant	rs1845925
Chromosome Location	chr18:38952375-38952376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:38950254..38953080-chr18:38959492..38961423,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11082228	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11875240	0.96[EUR][1000 genomes]
rs11876215	1.00[EUR][1000 genomes]
rs11877923	0.87[EUR][1000 genomes]
rs12373193	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12956831	0.98[EUR][1000 genomes]
rs12956896	0.98[EUR][1000 genomes]
rs12963842	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12968299	0.93[EUR][1000 genomes]
rs1496819	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16974379	0.87[EUR][1000 genomes]
rs16974401	0.87[EUR][1000 genomes]
rs2703163	0.98[EUR][1000 genomes]
rs2848784	0.98[EUR][1000 genomes]
rs34298584	0.96[EUR][1000 genomes]
rs34736827	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58843487	1.00[EUR][1000 genomes]
rs58876223	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6507417	0.99[EUR][1000 genomes]
rs7239092	0.87[EUR][1000 genomes]
rs9675507	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909564	chr18:38739067-39179256	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv833629	chr18:38791940-38959145	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv833630	chr18:38817119-39012222	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:38950600-38953800	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr18:38951200-38954000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr18:38951200-38958000	Weak transcription	Fetal Kidney	kidney
4	chr18:38951400-38952400	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr18:38951400-38952800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr18:38951400-38952800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr18:38951400-38954000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr18:38951600-38953200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr18:38951600-38953800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr18:38951600-38954200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr18:38952000-38953200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr18:38952200-38952400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr18:38952200-38952600	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr18:38952200-38953600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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