Variant report

Variant	rs1846118
Chromosome Location	chr3:11390200-11390201
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1391220	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2309737	1.00[AMR][1000 genomes]
rs34890254	0.82[EUR][1000 genomes]
rs57371365	0.89[EUR][1000 genomes]
rs57581586	0.89[EUR][1000 genomes]
rs58411582	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59589574	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60588324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6825071	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6848787	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73113835	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73113837	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73113851	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73113868	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73113871	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73113873	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73115433	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73115434	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73115445	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73115466	0.82[EUR][1000 genomes]
rs73115468	0.82[EUR][1000 genomes]
rs73122788	0.81[AMR][1000 genomes]
rs73124715	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9685431	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012749	chr3:10683806-11495502	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv536494	chr3:10683806-11495502	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv428737	chr3:11270310-11427240	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:11331400-11391800	Weak transcription	Stomach Mucosa	stomach
2	chr3:11349600-11408200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:11357800-11402000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:11359200-11403400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr3:11360000-11390200	Weak transcription	Fetal Kidney	kidney
6	chr3:11360600-11391600	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr3:11360800-11403600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:11361000-11407800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:11363000-11390200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:11363200-11399600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr3:11363400-11399800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr3:11365000-11391400	Weak transcription	NHLF	lung
13	chr3:11365200-11405000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:11369400-11402000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr3:11374200-11402200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:11376600-11390800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:11376600-11392600	Weak transcription	NHEK	skin
18	chr3:11382000-11391400	Strong transcription	Liver	Liver
19	chr3:11382600-11403000	Weak transcription	Psoas Muscle	Psoas
20	chr3:11383200-11396000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr3:11384600-11398800	Weak transcription	Esophagus	oesophagus
22	chr3:11384600-11406200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr3:11385600-11390200	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr3:11385800-11390200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr3:11385800-11390600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:11386000-11391200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr3:11386400-11391200	Weak transcription	Hela-S3	cervix
28	chr3:11386400-11399800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:11387000-11392200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr3:11387200-11390600	Strong transcription	Stomach Smooth Muscle	stomach
31	chr3:11387200-11391000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:11387200-11397200	Strong transcription	Primary T cells from cord blood	blood
33	chr3:11387400-11390400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:11387400-11390600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr3:11387400-11390800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr3:11387400-11390800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:11387400-11391200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr3:11387400-11391200	Strong transcription	Fetal Muscle Leg	muscle
39	chr3:11387400-11392200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr3:11387400-11393600	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr3:11387400-11394400	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr3:11387400-11395600	Strong transcription	Duodenum Mucosa	Duodenum
43	chr3:11387600-11390400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr3:11387600-11390400	Strong transcription	Fetal Muscle Trunk	muscle
45	chr3:11387600-11390400	Strong transcription	Ovary	ovary
46	chr3:11387600-11390400	Strong transcription	A549	lung
47	chr3:11387600-11391000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr3:11387600-11391000	Strong transcription	Adipose Nuclei	Adipose
49	chr3:11387600-11391000	Strong transcription	Fetal Intestine Large	intestine
50	chr3:11387600-11391000	Strong transcription	Fetal Thymus	thymus

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