Variant report

Variant	rs184668103
Chromosome Location	chr1:211572892-211572893
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211554866..211557592-chr1:211571886..211574017,3	K562	blood:

Variant related genes	Relation type
ENSG00000153363	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762141	chr1:211538685-211603843	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	n/a
2	esv1824154	chr1:211565640-211614280	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
3	esv3321965	chr1:211571888-211574349	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv3430720	chr1:211571934-211574302	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211556800-211585800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:211556800-211589800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:211557000-211573200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:211557000-211575000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr1:211557000-211576600	Weak transcription	Left Ventricle	heart
6	chr1:211557000-211580600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr1:211557000-211581000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:211557000-211581800	Weak transcription	Fetal Kidney	kidney
9	chr1:211557200-211573400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr1:211557400-211574400	Weak transcription	Brain Substantia Nigra	brain
11	chr1:211557400-211574400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr1:211557400-211575600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:211557400-211576000	Weak transcription	Fetal Intestine Small	intestine
14	chr1:211557600-211573400	Weak transcription	GM12878-XiMat	blood
15	chr1:211557600-211573400	Weak transcription	Hela-S3	cervix
16	chr1:211557600-211576200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:211561600-211573000	Weak transcription	Right Ventricle	heart
18	chr1:211565200-211573000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr1:211565600-211574000	Strong transcription	Liver	Liver
20	chr1:211566800-211574600	Weak transcription	Pancreas	Pancrea
21	chr1:211566800-211574800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr1:211566800-211576800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr1:211567000-211574600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:211567000-211581600	Weak transcription	Gastric	stomach
25	chr1:211568200-211573400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr1:211568200-211575000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr1:211568400-211573000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr1:211568600-211573600	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr1:211569000-211576600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr1:211569800-211573600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr1:211570000-211573000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr1:211570000-211573200	Weak transcription	Ovary	ovary
33	chr1:211570000-211574800	Weak transcription	Adipose Nuclei	Adipose
34	chr1:211570000-211575000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr1:211570200-211574800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr1:211570800-211581000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr1:211571600-211573000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr1:211571600-211573000	Weak transcription	Primary B cells from cord blood	blood
39	chr1:211571600-211573800	Active TSS	ES-I3 Cell Line	embryonic stem cell
40	chr1:211571600-211573800	Active TSS	H9 Cell Line	embryonic stem cell
41	chr1:211571800-211573000	Weak transcription	Primary B cells from peripheral blood	blood
42	chr1:211571800-211574400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr1:211572000-211573000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr1:211572000-211573000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr1:211572000-211573600	Active TSS	H1 Cell Line	embryonic stem cell
46	chr1:211572000-211573600	Active TSS	HUES64 Cell Line	embryonic stem cell
47	chr1:211572000-211573800	Active TSS	HUES48 Cell Line	embryonic stem cell
48	chr1:211572000-211573800	Active TSS	HUES6 Cell Line	embryonic stem cell
49	chr1:211572000-211574800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr1:211572400-211573200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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