Variant report

Variant	rs184671882
Chromosome Location	chr7:137930053-137930054
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:137878463..137879263-chr7:137929966..137930618,2	MCF-7	breast:
2	chr7:137929429..137931956-chr7:138145009..138148414,3	MCF-7	breast:
3	chr7:137927382..137930242-chr7:137937479..137939560,2	MCF-7	breast:
4	chr7:137878389..137879265-chr7:137929966..137930816,6	MCF-7	breast:
5	chr7:137917155..137919916-chr7:137928733..137931455,2	MCF-7	breast:
6	chr7:137919927..137921486-chr7:137928600..137931150,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122779	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831152	chr7:137884311-138033117	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3439287	chr7:137926912-137931110	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv527643	chr7:137929307-137954419	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137915000-137931800	Weak transcription	Right Atrium	heart
2	chr7:137927600-137932000	Enhancers	HepG2	liver
3	chr7:137927600-137933200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:137927800-137930600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:137928000-137932000	Enhancers	Fetal Heart	heart
6	chr7:137928200-137932400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:137928600-137931000	Weak transcription	Brain Germinal Matrix	brain
8	chr7:137928600-137931200	Enhancers	Liver	Liver
9	chr7:137928600-137931800	Weak transcription	NH-A	brain
10	chr7:137928600-137932400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:137928600-137933800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:137928800-137930200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr7:137928800-137931800	Weak transcription	K562	blood
14	chr7:137928800-137932000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:137928800-137933000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr7:137928800-137933200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr7:137928800-137933200	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr7:137928800-137933200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr7:137929000-137933400	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr7:137929200-137933600	Enhancers	H9 Cell Line	embryonic stem cell
21	chr7:137929400-137930200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr7:137929400-137930200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:137929400-137930200	Enhancers	Ovary	ovary
24	chr7:137929400-137930400	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr7:137929400-137931400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr7:137929400-137932600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr7:137929600-137930200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr7:137929600-137930600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:137929600-137931400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr7:137929600-137931600	Enhancers	Fetal Intestine Small	intestine
31	chr7:137929800-137931200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr7:137929800-137931600	Enhancers	Fetal Intestine Large	intestine
33	chr7:137930000-137930200	Enhancers	Spleen	Spleen
34	chr7:137930000-137930400	Enhancers	Hela-S3	cervix
35	chr7:137930000-137932000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr7:137930000-137932400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr7:137930000-137932800	Enhancers	Fetal Kidney	kidney
38	chr7:137930000-137932800	Enhancers	Placenta Amnion	Placenta Amnion

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