Variant report

Variant	rs184707963
Chromosome Location	chr4:86745838-86745839
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:86745824-86745874	AoSMC	blood vessel:	n/a
2	chr4:86745824-86745874	HMEC	breast:	n/a
3	chr4:86745824-86745874	K562	blood:	n/a
4	chr4:86745824-86745874	SKMC	muscle:	n/a
5	chr4:86745824-86745874	MCF10A-Er-Src	breast:	n/a
6	chr4:86745824-86745874	LNCaP	prostate:	n/a
7	chr4:86745824-86745874	SAEC	small airway:	n/a
8	chr4:86745824-86745874	NHDF-neo	bronchial:	n/a
9	chr4:86745824-86745874	HL-60	blood:	n/a
10	chr4:86745824-86745874	GM06990	blood:	n/a
11	chr4:86745824-86745874	HEEpiC	esophagus:	n/a
12	chr4:86745824-86745874	GM12891	blood:	n/a
13	chr4:86745824-86745874	HCM	heart:	n/a
14	chr4:86745824-86745874	Jurkat	blood:	n/a
15	chr4:86745824-86745874	H1-hESC	embryonic stem cell:	embryo
16	chr4:86745824-86745874	NB4	blood:	n/a
17	chr4:86745824-86745874	AG04450	lung:	fetal
18	chr4:86745824-86745874	GM12878	blood:	n/a
19	chr4:86745824-86745874	GM19239	blood:	n/a
20	chr4:86745824-86745874	U87	brain:	n/a
21	chr4:86745824-86745874	HRE	kidney:	n/a
22	chr4:86745824-86745874	HUVEC	blood vessel:	n/a
23	chr4:86745824-86745874	AG09309	skin:	n/a
24	chr4:86745824-86745874	HIPEpiC	eye:	n/a
25	chr4:86745824-86745874	BJ	skin:	n/a
26	chr4:86745824-86745874	HRCEpiC	kidney:	n/a
27	chr4:86745824-86745874	HNPCEpiC	eye:	n/a
28	chr4:86745824-86745874	PrEC	prostate:	n/a
29	chr4:86745824-86745874	HCPEpiC	choroid plexus:	n/a
30	chr4:86745824-86745874	MCF-7	breast:	n/a
31	chr4:86745824-86745874	SK-N-SH_RA	brain:	n/a
32	chr4:86745824-86745874	HRPEpiC	eye:	n/a
33	chr4:86745824-86745874	BE2_C	brain:	n/a
34	chr4:86745824-86745874	HCF	heart:	n/a
35	chr4:86745824-86745874	HEK293	kidney:	embryo
36	chr4:86745824-86745874	ECC-1	luminal epithelium:	n/a
37	chr4:86745824-86745874	SK-N-SH	brain:	n/a
38	chr4:86745824-86745874	T-47D	breast:	n/a
39	chr4:86745824-86745874	HepG2	liver:	n/a
40	chr4:86745824-86745874	NHBE	bronchial:	n/a
41	chr4:86745824-86745874	HCT-116	colon:	n/a
42	chr4:86745824-86745874	RPTEC	kidney:	n/a
43	chr4:86745824-86745874	CMK	blood:	n/a
44	chr4:86745824-86745874	PANC-1	pancreas:	n/a
45	chr4:86745824-86745874	A549	lung:	n/a
46	chr4:86745824-86745874	NH-A	brain:	n/a
47	chr4:86745824-86745874	SK-N-MC	brain:	n/a
48	chr4:86745824-86745874	HPAEpiC	pulmonary alveolar:	n/a
49	chr4:86745824-86745874	ProgFib	skin:	n/a
50	chr4:86745824-86745874	Caco-2	colon:	n/a

No data

Variant related genes	Relation type
ARHGAP24	CpG island

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879518	chr4:86739805-86778943	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86728200-86747200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:86729400-86747400	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:86736200-86748600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:86737600-86763200	Weak transcription	Primary B cells from cord blood	blood
5	chr4:86740200-86747000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:86740200-86747200	Weak transcription	Fetal Lung	lung
7	chr4:86740200-86748600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:86740200-86748800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr4:86741800-86747200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:86743000-86746000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:86743200-86748800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr4:86743600-86747200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr4:86743800-86747200	Weak transcription	Aorta	Aorta
14	chr4:86744200-86746000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:86744200-86748600	Enhancers	Fetal Heart	heart
16	chr4:86744200-86748600	Enhancers	HSMM	muscle
17	chr4:86744400-86746000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:86744400-86747000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr4:86744400-86747400	Enhancers	Fetal Kidney	kidney
20	chr4:86744600-86746000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr4:86744600-86746000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr4:86744600-86747000	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr4:86744600-86748200	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr4:86744600-86748600	Enhancers	Adipose Nuclei	Adipose
25	chr4:86744800-86746400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr4:86744800-86746400	Weak transcription	Fetal Intestine Small	intestine
27	chr4:86744800-86747200	Weak transcription	Spleen	Spleen
28	chr4:86744800-86747400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr4:86744800-86747400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr4:86744800-86747400	Weak transcription	Brain Germinal Matrix	brain
31	chr4:86744800-86748600	Weak transcription	Pancreas	Pancrea
32	chr4:86745000-86746400	Weak transcription	Fetal Muscle Leg	muscle
33	chr4:86745000-86747000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr4:86745000-86747200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr4:86745000-86747200	Weak transcription	Gastric	stomach
36	chr4:86745000-86747200	Weak transcription	Left Ventricle	heart
37	chr4:86745000-86747200	Weak transcription	Right Atrium	heart
38	chr4:86745000-86747200	Weak transcription	Small Intestine	intestine
39	chr4:86745000-86747400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr4:86745000-86747400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr4:86745000-86747400	Weak transcription	Right Ventricle	heart
42	chr4:86745400-86746000	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr4:86745400-86746600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr4:86745600-86746000	Enhancers	Pancreatic Islets	Pancreatic Islet
45	chr4:86745600-86746800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr4:86745600-86747000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr4:86745600-86747400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr4:86745600-86748600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr4:86745600-86749400	Enhancers	HUVEC	blood vessel
50	chr4:86745800-86746800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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