Variant report

Variant	rs1847314
Chromosome Location	chr11:16408536-16408537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10766321	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs10832613	0.84[CEU][hapmap]
rs10832614	0.84[CEU][hapmap]
rs12293115	0.92[CEU][hapmap]
rs297333	0.85[AFR][1000 genomes]
rs297334	0.95[YRI][hapmap]
rs297339	0.82[LWK][hapmap];0.85[MKK][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs7118874	0.84[CEU][hapmap]
rs7929425	0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs7932314	0.86[AFR][1000 genomes]
rs7942989	0.85[AFR][1000 genomes]
rs7951214	0.96[YRI][hapmap];0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv832075	chr11:16391700-16490934	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16388200-16414200	Weak transcription	Fetal Intestine Small	intestine
2	chr11:16406800-16415200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:16408000-16409000	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr11:16408000-16414400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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