Variant report

Variant	rs184740292
Chromosome Location	chr10:50122384-50122385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:122)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr10:50122151-50122420	SH-SY5Y	brain:	n/a	chr10:50122286-50122293 chr10:50122286-50122293 chr10:50122284-50122294 chr10:50122279-50122300 chr10:50122284-50122293 chr10:50122286-50122293

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:50122345-50122395	HRPEpiC	eye:	n/a
2	chr10:50122337-50122387	AG04449	skin:	fetal
3	chr10:50122337-50122387	CMK	blood:	n/a
4	chr10:50122337-50122387	HUVEC	blood vessel:	n/a
5	chr10:50122337-50122387	HCT-116	colon:	n/a
6	chr10:50122345-50122395	HRE	kidney:	n/a
7	chr10:50122345-50122395	AG09319	gingival:	n/a
8	chr10:50122345-50122395	AoSMC	blood vessel:	n/a
9	chr10:50122337-50122387	MCF-7	breast:	n/a
10	chr10:50122337-50122387	NHDF-neo	bronchial:	n/a
11	chr10:50122345-50122395	HUVEC	blood vessel:	n/a
12	chr10:50122337-50122387	GM12892	blood:	n/a
13	chr10:50122345-50122395	HCM	heart:	n/a
14	chr10:50122345-50122395	HNPCEpiC	eye:	n/a
15	chr10:50122345-50122395	Caco-2	colon:	n/a
16	chr10:50122345-50122395	HPAEpiC	pulmonary alveolar:	n/a
17	chr10:50122345-50122395	HRCEpiC	kidney:	n/a
18	chr10:50122345-50122395	HL-60	blood:	n/a
19	chr10:50122345-50122395	CMK	blood:	n/a
20	chr10:50122345-50122395	SK-N-SH_RA	brain:	n/a
21	chr10:50122337-50122387	PFSK-1	brain:	n/a
22	chr10:50122345-50122395	GM06990	blood:	n/a
23	chr10:50122345-50122395	GM12892	blood:	n/a
24	chr10:50122345-50122395	U87	brain:	n/a
25	chr10:50122337-50122387	HAEpiC	amniotic membrane:	n/a
26	chr10:50122345-50122395	Hepatocyte	liver:	n/a
27	chr10:50122337-50122387	H1-hESC	embryonic stem cell:	embryo
28	chr10:50122337-50122387	Hela-S3	cervix:	n/a
29	chr10:50122345-50122395	PFSK-1	brain:	n/a
30	chr10:50122345-50122395	SK-N-MC	brain:	n/a
31	chr10:50122345-50122395	A549	lung:	n/a
32	chr10:50122345-50122395	GM19239	blood:	n/a
33	chr10:50122337-50122387	GM12878	blood:	n/a
34	chr10:50122337-50122387	GM06990	blood:	n/a
35	chr10:50122345-50122395	NH-A	brain:	n/a
36	chr10:50122345-50122395	MCF-7	breast:	n/a
37	chr10:50122337-50122387	NB4	blood:	n/a
38	chr10:50122337-50122387	ECC-1	luminal epithelium:	n/a
39	chr10:50122337-50122387	HepG2	liver:	n/a
40	chr10:50122337-50122387	Hepatocyte	liver:	n/a
41	chr10:50122345-50122395	NT2-D1	testis:	n/a
42	chr10:50122337-50122387	BE2_C	brain:	n/a
43	chr10:50122345-50122395	HEK293	kidney:	embryo
44	chr10:50122337-50122387	HRCEpiC	kidney:	n/a
45	chr10:50122345-50122395	SAEC	small airway:	n/a
46	chr10:50122337-50122387	SAEC	small airway:	n/a
47	chr10:50122345-50122395	GM12891	blood:	n/a
48	chr10:50122345-50122395	HepG2	liver:	n/a
49	chr10:50122345-50122395	HIPEpiC	eye:	n/a
50	chr10:50122337-50122387	Caco-2	colon:	n/a

No data

Variant related genes	Relation type
LRRC18	TF binding region
LRRC18	CpG island

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv517287	chr10:50122181-50134266	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50072800-50126200	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:50074600-50129600	Strong transcription	Primary B cells from cord blood	blood
3	chr10:50075400-50126000	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:50101600-50122800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:50108400-50126000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:50109000-50126000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr10:50109400-50127800	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:50114200-50122800	Weak transcription	Lung	lung
9	chr10:50118200-50124800	Strong transcription	GM12878-XiMat	blood
10	chr10:50118800-50123600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:50120200-50122400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:50120400-50124800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:50121000-50123200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:50121000-50134800	Weak transcription	Spleen	Spleen
15	chr10:50121000-50155800	Weak transcription	Primary T cells from cord blood	blood

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