Variant report

Variant	rs184777165
Chromosome Location	chr8:118980593-118980594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:118968228..118970713-chr8:118979031..118981216,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933516	chr8:118764605-119009093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1032355	chr8:118896733-119003223	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv1025002	chr8:118970940-119069418	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3491637	chr8:118979632-118981558	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2606814	chr8:118979862-118981481	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv7867	chr8:118980525-118981350	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv1925197	chr8:118980593-118981321	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118969800-118986800	Weak transcription	Lung	lung
2	chr8:118970200-118981800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr8:118970400-118989800	Weak transcription	HSMMtube	muscle
4	chr8:118970600-118981800	Weak transcription	Fetal Lung	lung
5	chr8:118970800-118989000	Weak transcription	HUVEC	blood vessel
6	chr8:118971600-118993000	Weak transcription	Psoas Muscle	Psoas
7	chr8:118971800-118981800	Weak transcription	NH-A	brain
8	chr8:118971800-118983200	Weak transcription	Pancreas	Pancrea
9	chr8:118971800-118989000	Weak transcription	Ovary	ovary
10	chr8:118972000-118989600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr8:118972200-118981800	Weak transcription	Aorta	Aorta
12	chr8:118972200-118989600	Weak transcription	HSMM	muscle
13	chr8:118972200-118997000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr8:118973400-118981600	Weak transcription	HMEC	breast
15	chr8:118973400-118982000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:118973400-118982000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr8:118973600-118981200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:118973600-118981600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr8:118974400-118981600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr8:118974400-118982000	Weak transcription	Fetal Intestine Large	intestine
21	chr8:118974600-118987800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr8:118975400-118983200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr8:118975400-118992400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr8:118975800-118981200	Weak transcription	NHEK	skin
25	chr8:118975800-118981600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr8:118976000-118981800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr8:118976000-118981800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr8:118976600-118981800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr8:118976600-118991000	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr8:118976800-118981600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr8:118976800-118988600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr8:118977200-118983200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr8:118977600-118981600	Weak transcription	Osteobl	bone
34	chr8:118977800-118981800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr8:118977800-118981800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr8:118978200-118992000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr8:118978600-118981800	Weak transcription	A549	lung
38	chr8:118978600-118993000	Weak transcription	Fetal Muscle Trunk	muscle
39	chr8:118978800-118982000	Weak transcription	Small Intestine	intestine
40	chr8:118979000-118991000	Weak transcription	HepG2	liver
41	chr8:118979200-118981600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr8:118979200-118981800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr8:118979200-118988000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr8:118979400-118981800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr8:118979400-118983000	Weak transcription	NHLF	lung
46	chr8:118979400-118987000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr8:118979600-118981600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr8:118979600-118981800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr8:118980000-118981800	Weak transcription	Primary T cells from cord blood	blood
50	chr8:118980000-118982000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links