Variant report

Variant	rs184796795
Chromosome Location	chr3:138355390-138355391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:138352958..138355851-chr3:138357963..138360391,2	K562	blood:
2	chr3:138336729..138341143-chr3:138355200..138358307,3	K562	blood:
3	chr3:138354512..138356684-chr3:138362796..138364936,2	K562	blood:
4	chr3:138355271..138356796-chr3:138371743..138374136,2	K562	blood:

Variant related genes	Relation type
ENSG00000174715	Chromatin interaction
ENSG00000158234	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530057	chr3:138014877-138734390	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1013074	chr3:138213166-138737688	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1002612	chr3:138213274-138831792	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv536726	chr3:138213274-138831792	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv1009726	chr3:138219923-138737688	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv869205	chr3:138248190-138775288	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv868955	chr3:138248190-138848947	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv591854	chr3:138348081-138764229	Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv967070	chr3:138355155-138372373	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138328600-138358000	Weak transcription	Psoas Muscle	Psoas
2	chr3:138328800-138358000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:138335400-138368000	Weak transcription	Right Ventricle	heart
4	chr3:138337000-138360400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:138340400-138393800	Weak transcription	Fetal Brain Male	brain
6	chr3:138341200-138355800	Weak transcription	Dnd41	blood
7	chr3:138342400-138362200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:138342600-138356400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:138345000-138356600	Weak transcription	HSMMtube	muscle
10	chr3:138345000-138367800	Weak transcription	HSMM	muscle
11	chr3:138345200-138357600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:138345200-138357600	Weak transcription	Spleen	Spleen
13	chr3:138345400-138355600	Weak transcription	NH-A	brain
14	chr3:138345400-138361600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:138345400-138368000	Weak transcription	NHLF	lung
16	chr3:138345600-138356600	Weak transcription	Brain Substantia Nigra	brain
17	chr3:138345600-138367400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr3:138345800-138368000	Weak transcription	HMEC	breast
19	chr3:138346600-138356200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr3:138346600-138357800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr3:138348600-138355600	Weak transcription	Fetal Intestine Large	intestine
22	chr3:138348800-138357800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr3:138348800-138368000	Weak transcription	Hela-S3	cervix
24	chr3:138349000-138358200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr3:138349000-138367400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr3:138349000-138368000	Weak transcription	Pancreas	Pancrea
27	chr3:138349200-138355600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr3:138350800-138362800	Weak transcription	Thymus	Thymus
29	chr3:138350800-138367800	Weak transcription	Osteobl	bone
30	chr3:138351000-138357400	Weak transcription	Aorta	Aorta
31	chr3:138351400-138356600	Weak transcription	Left Ventricle	heart
32	chr3:138351400-138367800	Weak transcription	Ovary	ovary
33	chr3:138352000-138361000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:138352800-138357000	Weak transcription	Lung	lung
35	chr3:138353000-138357400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:138353000-138361600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:138353000-138367800	Weak transcription	Fetal Kidney	kidney
38	chr3:138353000-138368200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr3:138353200-138357000	Weak transcription	Adipose Nuclei	Adipose
40	chr3:138353200-138357600	Weak transcription	Fetal Muscle Leg	muscle
41	chr3:138353400-138355800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr3:138353400-138356800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr3:138354600-138355400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr3:138354600-138357200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links