Variant report

Variant	rs184804523
Chromosome Location	chr5:127406555-127406556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:127404446..127408379-chr5:127410147..127413224,3	MCF-7	breast:
2	chr5:127405958..127407674-chr5:127410063..127411683,2	K562	blood:
3	chr5:127406445..127408045-chr5:127418932..127420767,2	K562	blood:
4	chr5:127406296..127408029-chr5:127419300..127420986,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000064651	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1813981	chr5:127327649-127437401	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv1806594	chr5:127336033-127410767	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv1808488	chr5:127336033-127410767	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1825228	chr5:127336033-127410767	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1829119	chr5:127336033-127410767	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv1804376	chr5:127395854-127410583	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv1806383	chr5:127395854-127410583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv1807831	chr5:127395854-127410583	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv4993	chr5:127405214-127445622	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	esv3468549	chr5:127405453-127412851	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv3520428	chr5:127406203-127412201	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3468544	chr5:127406478-127412226	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3520427	chr5:127406553-127412151	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127333600-127417800	Weak transcription	Pancreas	Pancrea
2	chr5:127354600-127409800	Weak transcription	Left Ventricle	heart
3	chr5:127356400-127414000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr5:127374600-127418000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr5:127375200-127414400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:127376400-127414400	Weak transcription	Dnd41	blood
7	chr5:127377200-127414200	Weak transcription	K562	blood
8	chr5:127378000-127416600	Weak transcription	Spleen	Spleen
9	chr5:127378400-127414200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr5:127378800-127415800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr5:127379000-127417400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr5:127380200-127414600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr5:127380200-127416200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr5:127386400-127414400	Weak transcription	Colon Smooth Muscle	Colon
15	chr5:127386600-127417000	Weak transcription	Adipose Nuclei	Adipose
16	chr5:127389000-127409000	Weak transcription	Fetal Intestine Small	intestine
17	chr5:127389200-127409000	Weak transcription	Aorta	Aorta
18	chr5:127389200-127414400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr5:127389400-127414600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr5:127389600-127417000	Weak transcription	Fetal Heart	heart
21	chr5:127389800-127416200	Weak transcription	Thymus	Thymus
22	chr5:127390200-127415400	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr5:127390200-127417600	Weak transcription	Psoas Muscle	Psoas
24	chr5:127390400-127414200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr5:127390400-127416600	Weak transcription	Fetal Stomach	stomach
26	chr5:127390600-127415000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr5:127391000-127417600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:127391200-127414400	Weak transcription	A549	lung
29	chr5:127391400-127414800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr5:127391400-127416600	Weak transcription	Fetal Muscle Leg	muscle
31	chr5:127391600-127406600	Weak transcription	GM12878-XiMat	blood
32	chr5:127391600-127407600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr5:127391800-127409800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr5:127392200-127414400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr5:127394200-127418000	Weak transcription	Lung	lung
36	chr5:127394600-127416800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr5:127396000-127417000	Weak transcription	Ovary	ovary
38	chr5:127396200-127416200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr5:127396400-127408400	Weak transcription	Primary B cells from cord blood	blood
40	chr5:127396400-127413000	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr5:127396400-127414400	Weak transcription	Primary T cells from cord blood	blood
42	chr5:127398200-127416200	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr5:127398400-127407800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr5:127398400-127409000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr5:127398400-127414400	Weak transcription	NHDF-Ad	bronchial
46	chr5:127398400-127414600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr5:127398400-127415800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr5:127398400-127416200	Weak transcription	HSMMtube	muscle
49	chr5:127398400-127417400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr5:127398600-127414400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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