Variant report

Variant	rs1848484
Chromosome Location	chr5:90315036-90315037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90314128..90316238-chr5:90320139..90322345,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10038122	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10055587	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10058319	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10454910	0.83[ASN][1000 genomes]
rs12652491	0.84[ASN][1000 genomes]
rs12657388	0.82[ASN][1000 genomes]
rs12658697	0.84[ASN][1000 genomes]
rs13152882	0.86[ASN][1000 genomes]
rs1848481	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1848483	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1848485	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1976565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2367185	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2662281	0.81[EUR][1000 genomes]
rs2697547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4386756	0.84[ASN][1000 genomes]
rs4391205	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4916838	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4916839	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4916840	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6452928	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689544	0.81[EUR][1000 genomes]
rs951948	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv882369	chr5:90275825-90344149	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90308600-90318400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:90308800-90316000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:90309800-90323200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:90313200-90315200	Enhancers	Fetal Lung	lung
5	chr5:90313200-90315400	Enhancers	Colon Smooth Muscle	Colon
6	chr5:90313200-90315400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr5:90313200-90318200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr5:90313400-90315400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr5:90313400-90318400	Weak transcription	A549	lung
10	chr5:90313400-90321600	Weak transcription	Liver	Liver
11	chr5:90313600-90321400	Weak transcription	Small Intestine	intestine
12	chr5:90313800-90320000	Weak transcription	Adipose Nuclei	Adipose
13	chr5:90314000-90319200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr5:90314200-90315200	Enhancers	Stomach Mucosa	stomach
15	chr5:90314200-90316200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:90314200-90319800	Weak transcription	Fetal Stomach	stomach
17	chr5:90314200-90320800	Weak transcription	Fetal Intestine Large	intestine
18	chr5:90314400-90315200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr5:90314400-90316200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:90314400-90317400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr5:90314400-90318400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr5:90314800-90315200	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr5:90314800-90316000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr5:90314800-90316000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr5:90314800-90316600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr5:90314800-90316800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr5:90314800-90323200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr5:90314800-90327000	Weak transcription	Gastric	stomach
29	chr5:90315000-90315200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr5:90315000-90315200	Enhancers	K562	blood
31	chr5:90315000-90316200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr5:90315000-90317400	Weak transcription	Psoas Muscle	Psoas
33	chr5:90315000-90318400	Weak transcription	Fetal Intestine Small	intestine

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