Variant report

Variant	rs184866533
Chromosome Location	chr15:33357450-33357451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33312296..33313936-chr15:33357129..33359638,2	MCF-7	breast:
2	chr15:33297830..33309224-chr15:33355310..33362883,25	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259686	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv524708	chr15:33357262-33365334	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33337000-33358000	Weak transcription	Colonic Mucosa	Colon
2	chr15:33345600-33358200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:33348000-33358200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr15:33348200-33360000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:33350400-33358800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:33350400-33358800	Weak transcription	Pancreas	Pancrea
7	chr15:33350600-33358200	Weak transcription	Placenta	Placenta
8	chr15:33355000-33358600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:33355400-33360600	Weak transcription	Right Ventricle	heart
10	chr15:33355600-33358600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:33355600-33358800	Weak transcription	Small Intestine	intestine
12	chr15:33355600-33358800	Active TSS	Thymus	Thymus
13	chr15:33355800-33358600	Weak transcription	Gastric	stomach
14	chr15:33356000-33357600	Genic enhancers	HSMM	muscle
15	chr15:33356400-33357800	Flanking Active TSS	NH-A	brain
16	chr15:33356400-33359200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:33356600-33358400	Active TSS	Rectal Mucosa Donor 29	rectum
18	chr15:33356600-33359000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:33356600-33359800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr15:33356800-33357600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:33356800-33357600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr15:33356800-33358000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr15:33356800-33358000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:33356800-33358200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:33356800-33358400	Weak transcription	Hela-S3	cervix
26	chr15:33356800-33361000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr15:33357000-33357600	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr15:33357000-33358200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr15:33357000-33358200	Weak transcription	HepG2	liver
30	chr15:33357000-33359200	Enhancers	Duodenum Mucosa	Duodenum
31	chr15:33357200-33358200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr15:33357200-33358400	Weak transcription	Fetal Thymus	thymus
33	chr15:33357200-33358800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr15:33357200-33359200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr15:33357200-33359800	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr15:33357400-33357600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:33357400-33357600	Active TSS	Rectal Mucosa Donor 31	rectum
38	chr15:33357400-33357600	Enhancers	HSMMtube	muscle
39	chr15:33357400-33357600	Enhancers	Osteobl	bone
40	chr15:33357400-33357800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:33357400-33358000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr15:33357400-33358200	Weak transcription	Stomach Mucosa	stomach
43	chr15:33357400-33358200	Weak transcription	NHLF	lung
44	chr15:33357400-33358400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr15:33357400-33358400	Weak transcription	NHDF-Ad	bronchial
46	chr15:33357400-33358600	Weak transcription	Lung	lung
47	chr15:33357400-33358800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr15:33357400-33358800	Weak transcription	Esophagus	oesophagus
49	chr15:33357400-33358800	Weak transcription	HMEC	breast
50	chr15:33357400-33359400	Weak transcription	Fetal Kidney	kidney

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