Variant report

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13110308	0.89[ASN][1000 genomes]
rs13116962	0.87[ASN][1000 genomes]
rs13124620	0.87[ASN][1000 genomes]
rs1355439	0.93[ASN][1000 genomes]
rs1397766	0.93[ASN][1000 genomes]
rs2136998	0.93[ASN][1000 genomes]
rs2292395	0.93[ASN][1000 genomes]
rs2390053	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3789140	0.88[ASN][1000 genomes]
rs56147303	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6534215	0.85[ASN][1000 genomes]
rs67704505	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6823191	0.85[ASN][1000 genomes]
rs6825664	0.87[ASN][1000 genomes]
rs6827372	0.88[ASN][1000 genomes]
rs6845666	0.84[ASN][1000 genomes]
rs6851591	0.88[ASN][1000 genomes]
rs72621832	0.85[ASN][1000 genomes]
rs7675540	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv461634	chr4:121623057-121765527	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv595334	chr4:121623057-121765527	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1013704	chr4:121657648-121791601	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121729600-121770400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:121730200-121753400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:121730400-121760000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:121730400-121760800	Weak transcription	Pancreas	Pancrea
5	chr4:121732200-121754800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:121737600-121759800	Weak transcription	Lung	lung
7	chr4:121737800-121754400	Weak transcription	Aorta	Aorta
8	chr4:121738200-121759600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:121743800-121765400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:121747200-121755400	Weak transcription	Fetal Intestine Large	intestine
11	chr4:121748000-121753600	Weak transcription	Fetal Intestine Small	intestine
12	chr4:121750400-121768400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr4:121751600-121756400	Weak transcription	Left Ventricle	heart
14	chr4:121751600-121762000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:121751800-121754600	Weak transcription	Psoas Muscle	Psoas
16	chr4:121751800-121759600	Weak transcription	Ovary	ovary
17	chr4:121752000-121754200	Weak transcription	NHDF-Ad	bronchial
18	chr4:121752000-121754400	Weak transcription	Fetal Lung	lung
19	chr4:121752600-121754000	Weak transcription	Fetal Heart	heart
20	chr4:121752600-121755600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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