Variant report

Variant	rs184957255
Chromosome Location	chr14:104312304-104312305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr14:104311782-104312304	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:104180818..104182685-chr14:104312303..104315136,2	MCF-7	breast:
2	chr14:104201896..104204456-chr14:104312035..104314445,3	MCF-7	breast:

Variant related genes	Relation type
LINC00637	TF binding region
ENSG00000088808	Chromatin interaction
ENSG00000126215	Chromatin interaction
ENSG00000100711	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
2	nsv1045162	chr14:104140525-104594841	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542204	chr14:104140525-104594841	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	esv2758368	chr14:104147525-104412813	Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2760013	chr14:104147525-104412813	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv902313	chr14:104162263-104378087	Bivalent Enhancer Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
7	nsv902318	chr14:104255083-104464809	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
8	nsv902319	chr14:104255083-104620077	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	64 gene(s)	inside rSNPs	diseases
9	esv1838047	chr14:104283104-104359121	Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	nsv902321	chr14:104283104-104378087	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	esv1817657	chr14:104311251-104314960	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104292000-104312400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr14:104295200-104312400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:104295200-104312600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:104295200-104312600	Weak transcription	Small Intestine	intestine
5	chr14:104303800-104312400	Weak transcription	Adipose Nuclei	Adipose
6	chr14:104304000-104312400	Weak transcription	Lung	lung
7	chr14:104304000-104312800	Weak transcription	Esophagus	oesophagus
8	chr14:104304000-104313000	Weak transcription	Spleen	Spleen
9	chr14:104305400-104312800	Weak transcription	Gastric	stomach
10	chr14:104306200-104312400	Weak transcription	Ovary	ovary
11	chr14:104306200-104312400	Weak transcription	Psoas Muscle	Psoas
12	chr14:104306600-104312400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:104306800-104312400	Weak transcription	Brain Angular Gyrus	brain
14	chr14:104306800-104312400	Weak transcription	Brain Hippocampus Middle	brain
15	chr14:104307200-104312400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:104307200-104312400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr14:104307800-104312400	Weak transcription	Stomach Mucosa	stomach
18	chr14:104308800-104312400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr14:104309000-104312800	Weak transcription	Placenta	Placenta
20	chr14:104309200-104312400	Weak transcription	Colonic Mucosa	Colon
21	chr14:104309600-104312400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr14:104310600-104312400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:104310600-104312400	Enhancers	HepG2	liver
24	chr14:104311000-104312400	Weak transcription	Left Ventricle	heart
25	chr14:104311000-104312800	Weak transcription	Pancreas	Pancrea
26	chr14:104311600-104312400	Enhancers	Liver	Liver
27	chr14:104311600-104312600	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr14:104311600-104312600	Enhancers	Brain Cingulate Gyrus	brain
29	chr14:104311800-104312400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr14:104311800-104312400	Active TSS	Fetal Heart	heart
31	chr14:104311800-104312400	Enhancers	GM12878-XiMat	blood
32	chr14:104311800-104313000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr14:104311800-104313000	Flanking Active TSS	NHEK	skin
34	chr14:104311800-104314600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr14:104311800-104314600	Active TSS	Right Atrium	heart
36	chr14:104312000-104312400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr14:104312000-104312600	Bivalent Enhancer	Primary B cells from cord blood	blood
38	chr14:104312000-104312600	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr14:104312000-104315200	Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr14:104312200-104312400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
41	chr14:104312200-104312400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
42	chr14:104312200-104312400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
43	chr14:104312200-104312400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
44	chr14:104312200-104312400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr14:104312200-104312400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr14:104312200-104312400	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr14:104312200-104312400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr14:104312200-104312400	Active TSS	Brain Anterior Caudate	brain
49	chr14:104312200-104312400	Enhancers	Brain Substantia Nigra	brain
50	chr14:104312200-104312400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum

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