Variant report

Variant	rs184962244
Chromosome Location	chrX:79970239-79970240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916218	chrX:79377399-80230929	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv532882	chrX:79884715-80017999	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv524776	chrX:79903169-80012807	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv533969	chrX:79915477-79989648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv916918	chrX:79966539-79989648	Weak transcription Strong transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:79926200-79978000	Weak transcription	NH-A	brain
2	chrX:79930800-79987600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chrX:79931000-79971000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chrX:79931000-79982800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chrX:79931200-79985600	Weak transcription	A549	lung
6	chrX:79932800-79984800	Weak transcription	Brain Anterior Caudate	brain
7	chrX:79933000-79972200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chrX:79933400-79972000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chrX:79933400-79984600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chrX:79934600-79975200	Weak transcription	GM12878-XiMat	blood
11	chrX:79935400-79986800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chrX:79936000-79977600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chrX:79936200-79980800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chrX:79936600-80000200	Weak transcription	Small Intestine	intestine
15	chrX:79937000-79982000	Weak transcription	HSMMtube	muscle
16	chrX:79937000-80003600	Weak transcription	Fetal Lung	lung
17	chrX:79940200-79972600	Weak transcription	Fetal Kidney	kidney
18	chrX:79942600-79977600	Weak transcription	HSMM	muscle
19	chrX:79943800-79984800	Weak transcription	Brain Germinal Matrix	brain
20	chrX:79947200-79975400	Weak transcription	Pancreas	Pancrea
21	chrX:79950200-79971400	Weak transcription	Spleen	Spleen
22	chrX:79950200-79980000	Weak transcription	Esophagus	oesophagus
23	chrX:79950400-79971600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chrX:79950400-80001600	Weak transcription	Placenta	Placenta
25	chrX:79950600-79978800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chrX:79950600-80012000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chrX:79950800-79974600	Weak transcription	Gastric	stomach
28	chrX:79950800-79977200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chrX:79950800-79977800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chrX:79950800-79978000	Weak transcription	Fetal Muscle Trunk	muscle
31	chrX:79950800-79979200	Weak transcription	Thymus	Thymus
32	chrX:79950800-79979400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chrX:79950800-79981400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chrX:79950800-79984200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chrX:79950800-80008200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chrX:79951000-79977800	Weak transcription	Fetal Intestine Large	intestine
37	chrX:79951200-79987600	Weak transcription	Osteobl	bone
38	chrX:79951400-79979000	Weak transcription	Adipose Nuclei	Adipose
39	chrX:79951600-79979800	Weak transcription	Stomach Smooth Muscle	stomach
40	chrX:79951600-79989400	Weak transcription	Brain Hippocampus Middle	brain
41	chrX:79951600-80006000	Weak transcription	Primary B cells from cord blood	blood
42	chrX:79952000-79972000	Weak transcription	Primary hematopoietic stem cells	blood
43	chrX:79953200-79986800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chrX:79953400-80007600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chrX:79954000-79970800	Weak transcription	Primary T cells from cord blood	blood
46	chrX:79954800-79972400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chrX:79954800-79991800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chrX:79954800-80001400	Weak transcription	Fetal Stomach	stomach
49	chrX:79954800-80022200	Weak transcription	Fetal Intestine Small	intestine
50	chrX:79955600-79977800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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