Variant report

Variant	rs184990896
Chromosome Location	chrX:73563560-73563561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chrX:73562956-73563657	PBDE	blood:	n/a	chrX:73562958-73562965
2	RCOR1	chrX:73563264-73563597	K562	blood:	n/a	n/a
3	FOSL2	chrX:73563544-73564209	A549	lung:	n/a	n/a
4	CTCF	chrX:73563180-73564565	SK-N-SH	brain:	n/a	n/a
5	SETDB1	chrX:73563437-73564349	U2OS	brain:	n/a	n/a
6	SPI1	chrX:73563408-73564254	HL-60	blood:	n/a	n/a
7	KAP1	chrX:73563396-73564200	U2OS	brain:	n/a	n/a
8	TCF12	chrX:73563509-73564286	A549	lung:	n/a	n/a
9	CCNT2	chrX:73563336-73564150	K562	blood:	n/a	n/a
10	BCL3	chrX:73563545-73564257	A549	lung:	n/a	n/a
11	KAP1	chrX:73563306-73564318	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
ENSG00000226515	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases
2	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv520605	chrX:73549327-73569476	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73562400-73563600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chrX:73562600-73564200	Enhancers	Stomach Mucosa	stomach
3	chrX:73562600-73564600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chrX:73562800-73563600	Enhancers	Duodenum Mucosa	Duodenum
5	chrX:73562800-73564600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chrX:73562800-73564600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chrX:73562800-73564600	Enhancers	Hela-S3	cervix
8	chrX:73563000-73563600	Enhancers	NHDF-Ad	bronchial
9	chrX:73563000-73563800	Enhancers	HUVEC	blood vessel
10	chrX:73563200-73563600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chrX:73563200-73563600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chrX:73563200-73563800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chrX:73563200-73563800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chrX:73563200-73563800	Enhancers	NH-A	brain
15	chrX:73563200-73564000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chrX:73563200-73564000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chrX:73563200-73564400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chrX:73563200-73564600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chrX:73563200-73564600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chrX:73563200-73564600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chrX:73563400-73563600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chrX:73563400-73563600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chrX:73563400-73563600	Enhancers	Rectal Mucosa Donor 31	rectum
24	chrX:73563400-73563800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chrX:73563400-73563800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chrX:73563400-73563800	Enhancers	Muscle Satellite Cultured Cells	--
27	chrX:73563400-73563800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chrX:73563400-73563800	Flanking Active TSS	A549	lung
29	chrX:73563400-73564000	Enhancers	Primary hematopoietic stem cells	blood
30	chrX:73563400-73564000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chrX:73563400-73564000	Enhancers	Dnd41	blood
32	chrX:73563400-73564200	Enhancers	Adipose Nuclei	Adipose
33	chrX:73563400-73564200	Enhancers	Osteobl	bone

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