Variant report

Variant	rs185026142
Chromosome Location	chr4:48484642-48484643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470034	chr4:48427773-48605628	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv594121	chr4:48427773-48605628	Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv829925	chr4:48467693-48639342	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv879008	chr4:48473439-48496804	Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv879009	chr4:48476539-48494546	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv3421012	chr4:48483395-48487593	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48484000-48484800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr4:48484200-48484800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:48484400-48484800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:48484400-48484800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
5	chr4:48484400-48484800	Enhancers	A549	lung
6	chr4:48484600-48484800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr4:48484600-48484800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
8	chr4:48484600-48485000	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
9	chr4:48484600-48485000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
10	chr4:48484600-48485000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
11	chr4:48484600-48485000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
12	chr4:48484600-48485000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr4:48484600-48485200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
14	chr4:48484600-48485200	Flanking Active TSS	K562	blood
15	chr4:48484600-48486600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
16	chr4:48484600-48486600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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