Variant report

Variant	rs185038462
Chromosome Location	chr9:71348316-71348317
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71347274..71349362-chr9:71397346..71399719,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026962	chr9:71130848-71357605	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv2422258	chr9:71234845-71663340	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1017903	chr9:71276951-71690579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv2757339	chr9:71291107-71353743	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2759693	chr9:71291107-71353743	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv893415	chr9:71347988-71364351	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71322000-71349400	Weak transcription	Aorta	Aorta
2	chr9:71337000-71350600	Weak transcription	Gastric	stomach
3	chr9:71342600-71354600	Enhancers	Fetal Intestine Large	intestine
4	chr9:71343400-71363000	Weak transcription	GM12878-XiMat	blood
5	chr9:71343800-71357200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr9:71344600-71354000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr9:71344800-71350400	Enhancers	Fetal Intestine Small	intestine
8	chr9:71345400-71350200	Enhancers	Stomach Mucosa	stomach
9	chr9:71345400-71350800	Weak transcription	Colonic Mucosa	Colon
10	chr9:71345600-71352800	Enhancers	Fetal Heart	heart
11	chr9:71346600-71352200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr9:71346600-71353400	Weak transcription	Psoas Muscle	Psoas
13	chr9:71346800-71350600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:71346800-71350600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr9:71346800-71350800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:71347000-71352200	Enhancers	Duodenum Mucosa	Duodenum
17	chr9:71347200-71350600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr9:71347200-71354600	Weak transcription	K562	blood
19	chr9:71347400-71348400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:71347400-71357800	Weak transcription	Primary B cells from cord blood	blood
21	chr9:71347600-71348400	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr9:71347600-71348400	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr9:71347800-71348400	Enhancers	Right Atrium	heart
24	chr9:71348000-71348400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr9:71348000-71348400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr9:71348000-71348400	Enhancers	Left Ventricle	heart
27	chr9:71348000-71349400	Enhancers	Placenta Amnion	Placenta Amnion
28	chr9:71348000-71350400	Weak transcription	Right Ventricle	heart
29	chr9:71348000-71354400	Weak transcription	Pancreas	Pancrea
30	chr9:71348200-71348400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr9:71348200-71348400	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr9:71348200-71348400	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr9:71348200-71350800	Weak transcription	Small Intestine	intestine
34	chr9:71348200-71350800	Enhancers	HepG2	liver
35	chr9:71348200-71359000	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links