Variant report

Variant	rs185110283
Chromosome Location	chr12:48840176-48840177
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr12:48840031-48840422	Hela-S3	cervix:	n/a	chr12:48840193-48840202 chr12:48840193-48840204
2	STAT3	chr12:48840037-48840556	MCF10A-Er-Src	breast:	n/a	chr12:48840130-48840141 chr12:48840193-48840201
3	NFIC	chr12:48839824-48840673	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
OR8T1P	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv832402	chr12:48686761-48851020	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv977157	chr12:48839854-48852791	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48833800-48840400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr12:48834200-48840400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:48834200-48840400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr12:48839200-48840200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr12:48839200-48840400	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr12:48839200-48840400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr12:48839400-48840200	Enhancers	Primary T cells from cord blood	blood
8	chr12:48839400-48840200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr12:48839400-48840400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr12:48839400-48840400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr12:48839400-48840400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr12:48839600-48840200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr12:48839600-48840200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr12:48839600-48840400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr12:48839600-48840400	Enhancers	Hela-S3	cervix
16	chr12:48839600-48841000	Enhancers	Fetal Heart	heart
17	chr12:48839600-48841200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr12:48839800-48840200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr12:48839800-48840200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr12:48839800-48840400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr12:48839800-48840400	Enhancers	Primary T cells fromperipheralblood	blood
22	chr12:48839800-48840400	Enhancers	Psoas Muscle	Psoas
23	chr12:48839800-48840400	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr12:48839800-48840400	Enhancers	GM12878-XiMat	blood
25	chr12:48839800-48840400	Bivalent Enhancer	HUVEC	blood vessel
26	chr12:48839800-48840600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr12:48839800-48840600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr12:48840000-48840200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr12:48840000-48840400	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links