Variant report

Variant	rs1851105
Chromosome Location	chr2:190239979-190239980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:190238500..190240603-chr2:190242623..190245183,2	MCF-7	breast:
2	chr2:190235250..190237838-chr2:190239605..190241943,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10497700	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10755004	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10931414	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10931415	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10931416	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10931418	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10931419	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1112578	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1157910	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11677066	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11688021	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11691691	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11695159	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12612412	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12616234	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12623723	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12990035	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12990235	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12997620	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13004187	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13015203	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13032853	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13033841	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1356977	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1402368	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1520855	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1520857	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1520859	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1520863	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1520864	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1581351	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1949604	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1949605	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2304703	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4287797	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4353589	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4666774	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4667281	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6728055	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6745108	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7588453	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7593821	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7596592	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs963738	0.82[AMR][1000 genomes]
rs9679659	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv875614	chr2:190110841-190254758	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	esv3451292	chr2:190225623-190266276	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv963941	chr2:190238972-190244573	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190233400-190241400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr2:190235000-190243800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:190235400-190243800	Weak transcription	Aorta	Aorta
4	chr2:190235800-190241800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:190235800-190243600	Weak transcription	NHLF	lung
6	chr2:190236000-190241800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:190236000-190243600	Weak transcription	NH-A	brain
8	chr2:190236000-190243800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:190236000-190243800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:190236400-190243600	Weak transcription	HSMM	muscle
11	chr2:190237200-190240600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:190237600-190240800	Enhancers	Osteobl	bone
13	chr2:190238000-190241800	Weak transcription	NHEK	skin
14	chr2:190238800-190240200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:190238800-190240200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:190238800-190241400	Weak transcription	Fetal Intestine Large	intestine
17	chr2:190238800-190243600	Weak transcription	NHDF-Ad	bronchial
18	chr2:190238800-190243800	Weak transcription	HMEC	breast
19	chr2:190239400-190243800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr2:190239600-190240600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr2:190239600-190242400	Enhancers	A549	lung

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