Variant report

Variant	rs185133
Chromosome Location	chr16:79599482-79599483
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79589254..79592175-chr16:79597127..79599892,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs173645	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs250158	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs250159	0.81[EUR][1000 genomes]
rs250161	0.80[EUR][1000 genomes]
rs250162	0.81[EUR][1000 genomes]
rs250163	0.81[EUR][1000 genomes]
rs250165	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs250166	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs250170	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs30406	0.84[ASN][1000 genomes]
rs30407	0.84[ASN][1000 genomes]
rs30408	0.84[ASN][1000 genomes]
rs30411	0.84[ASN][1000 genomes]
rs30426	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs381823	1.00[ASN][1000 genomes]
rs396982	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs39846	0.86[EUR][1000 genomes]
rs398465	1.00[ASN][1000 genomes]
rs399239	1.00[ASN][1000 genomes]
rs40965	0.84[ASN][1000 genomes]
rs440271	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv833295	chr16:79568878-79726768	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1060796	chr16:79590617-79609857	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1064997	chr16:79591279-79608618	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1056252	chr16:79591279-79608831	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1063641	chr16:79591279-79614168	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79598400-79603200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr16:79598600-79603200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr16:79598600-79603200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr16:79598600-79604800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr16:79598800-79605600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr16:79598800-79606400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr16:79599000-79600400	Enhancers	Liver	Liver
8	chr16:79599000-79605000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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