Variant report

Variant	rs185138986
Chromosome Location	chr13:39922436-39922437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3344979	chr13:39922082-39922508	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39904200-39923600	Weak transcription	Ovary	ovary
2	chr13:39910600-39924400	Weak transcription	Adipose Nuclei	Adipose
3	chr13:39912400-39924600	Weak transcription	Fetal Lung	lung
4	chr13:39914200-39924400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr13:39914400-39922800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr13:39914800-39924600	Weak transcription	Fetal Stomach	stomach
7	chr13:39915800-39924200	Weak transcription	Osteobl	bone
8	chr13:39916200-39928000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:39916800-39928000	Weak transcription	NHDF-Ad	bronchial
10	chr13:39918200-39928000	Weak transcription	Esophagus	oesophagus
11	chr13:39918400-39923800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr13:39919800-39923000	Enhancers	Right Atrium	heart
13	chr13:39920400-39923800	Weak transcription	HSMMtube	muscle
14	chr13:39921600-39923000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr13:39921800-39922600	Weak transcription	Right Ventricle	heart
16	chr13:39921800-39925400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr13:39922000-39922600	Flanking Active TSS	Fetal Heart	heart
18	chr13:39922000-39923000	Enhancers	Left Ventricle	heart
19	chr13:39922200-39922600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
20	chr13:39922200-39922600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr13:39922200-39922600	Active TSS	Duodenum Mucosa	Duodenum
22	chr13:39922200-39922600	Enhancers	Placenta Amnion	Placenta Amnion
23	chr13:39922200-39922800	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr13:39922200-39923000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr13:39922200-39923000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr13:39922200-39923000	Flanking Active TSS	Brain Substantia Nigra	brain
27	chr13:39922200-39923200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
28	chr13:39922200-39923200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr13:39922200-39923200	Enhancers	Fetal Muscle Leg	muscle
30	chr13:39922200-39923600	Enhancers	Brain Germinal Matrix	brain
31	chr13:39922200-39924600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
32	chr13:39922200-39925200	Enhancers	Brain Cingulate Gyrus	brain
33	chr13:39922200-39925400	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr13:39922200-39925400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr13:39922200-39925400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr13:39922200-39925600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr13:39922400-39922600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
38	chr13:39922400-39922600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
39	chr13:39922400-39922600	Flanking Active TSS	Brain Anterior Caudate	brain
40	chr13:39922400-39922600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
41	chr13:39922400-39922600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr13:39922400-39922600	Enhancers	Fetal Brain Female	brain
43	chr13:39922400-39922600	Enhancers	Gastric	stomach
44	chr13:39922400-39922800	Enhancers	H9 Cell Line	embryonic stem cell
45	chr13:39922400-39922800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
46	chr13:39922400-39923000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr13:39922400-39923000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
48	chr13:39922400-39923000	Enhancers	Lung	lung
49	chr13:39922400-39923000	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr13:39922400-39923000	Enhancers	Small Intestine	intestine

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